Name : VC0395_A1364 (VC0395_A1364)
Accession : YP_001217307.1
PAI name : VPI-2
PAI accession : NC_009457_P3
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Not determined
Product : hypothetical protein
Function : -
Note : identified by match to protein family HMM PF03235; match to protein family HMM PF07510
Homologs in the searched genomes : 11 hits ( 11 protein-level )
Publication :
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "A recalibrated molecular clock and independent origins for the cholera pandemic clones", PLoS ONE 3 (12), E4053 (2008) PUBMED 19115014.
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "Direct Submission", Submitted (18-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Heidelberg,J., "Direct Submission", Submitted (16-MAR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
| DNA sequence : | |
ATGGGTGATCATTTATCGGTGCAAACTGAGCTTCTGACGCTTGAGAAAATCTACACCGACAACTACCAGTTCTCTATTCC
CAGCTATCAACGTCCTTATGTCTGGTCAGATGATGATGTCTTGCTGCTGTTCAGAGATATTAAAGAAGCGTGTCGATTAA
AAGAGCCAAACTACTTTATCGGCACCATCCTGTCGTCTCGCATTGAACAAGATGGAGAGCGGATCTATGAGTTGATCGAT
GGTCAGCAACGCACGACAACGCTAATGCTCATGACCATTGCTTTCAAGTACGCAGGCATTAAATCCGATCTTGCAGGGCT
TGCTGTTTATACATCGAGTGATGGTGAAGATAAGCCACGTCTCCAATTTTCAATTCGTGAGCAAGTTCAGCAGCTTTTAG
GTGGTCTAGCGGGGCTTAAGAACTATCAAGTGCCGTCTAAGGAAACGATCGCTGACAATGCTTATTTGAAACAGATGGGC
GTGGCGTTAGACGTATTGACCAAAGAAGTAGAGAAGCTCAAATCAGACGATGGGGTGAGCGCCGAAGCTATGGGGGATTA
CCTCTACCGCCAAGTTCAATGGGTAAATAACATTGTGCCAACACAAATGGACTTAAACCGATTGTTTGCCACCATGAATA
CCGCTGGCATTCAATTAGAACAAGCGGACATTCTAAAGGCGAAGCTGTTCAAGCATATCCATACTGACAAAGCACAGTAT
GATGCAATGTGGGTGGCGTGTGAGCATCTGGAAAACTATTTTGAACGCAATGTACGCAAAGTATTTCCTAATGCGGATTG
GTACCATATTGAACCCGAACATTTGGCGTCTTTTGATGCTGAACGTTTCGCTGCAAAAGATGAAACGTCAGAGGCGTTGT
CTGGCTTGTCGATTGCTGAGCTAGCGTCACAAGTTAAAGCAAGTTCAATTCCTGATAACACCGAGCAAGAGAAGTTTGAA
ACTTACGACTTGGACGTTGAAACAGTTTATTGTCGCCCGATCATCAAGTTCCCGCTGTTATTGATTCACGCTTATCGAGT
CTACTTAGCGCTTAATGATCATAATGATATTGAACCACGTCTGCATAGCGATCGCTTGTTGGAGATATTCGACCCACTTA
TCAACGGTGATGAGCAATCGGTAAAGCTGTTTATTGAAACGCTATGGCAGGTTCGCTACCAGTTTGACCGTTGGGTTGTA
AAATGGGTTGAATGTGATGATGCGACAGATGCGCAGCTCGGCTTAACGTATCAATCTCGCAGCAAGTCGAATGACACTTA
CTACATCAACCGAACGCAGAAAGAGCTGACGGATATTGTGCTTTTGCAAAGTGTTCGCAACTTTACCGGTGAGCGCAGCG
CCCAGTATTGGTTAACACCATTTCTTTCAGGCTTGATCCGTTCGAGTATCAAGCAAGACTCTGTCGCGTTAGAGCTACTA
GAAAACATTGACAACAAAATGTCATTGTCTGTTGATACTCAAAAAGAGGCCAGCTTTGCACTCGCTGAAGGCATAGAGCC
AAACTGCCAGAGTTGGCAATCTCAATCGACATATTTTGCAAAGTCGTTAGGTACGAGCTTTGAGCATTACTGGTTTCAAA
AACTTGAATATTTGATTTGGAAGAAAATGAAGGCGTCAGAATCTTCATTGCCTTCTGAAGAATTGAATAAGTTTAAAAAG
TACCGGATTACATCCAAAAACTCAGTAGAACATGTTCATCCTCAAAATGATGAGTATAACAGTAGGTTAGACTGTGAAAC
GTTAAACTCATTTGGAAATCTAGTGCTACTGAGTCCAGGTGAAAACTCGTCTTATAGCAATCAAGATGTTGACAAGAAAC
GCATCGACTTCGAGAGAAAATCCCACTTTGACGCACTGAAATTAAGAGAGATATTCGGTGTGAAAGGTCAGGGACTGTGG
GGCAAACAGCAGATAGATAACCATCTAGAAGACATGATGGCAGTATTTGCTCAGCACTATAAACATCAATAA
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| Protein sequence : | |
MGDHLSVQTELLTLEKIYTDNYQFSIPSYQRPYVWSDDDVLLLFRDIKEACRLKEPNYFIGTILSSRIEQDGERIYELID
GQQRTTTLMLMTIAFKYAGIKSDLAGLAVYTSSDGEDKPRLQFSIREQVQQLLGGLAGLKNYQVPSKETIADNAYLKQMG
VALDVLTKEVEKLKSDDGVSAEAMGDYLYRQVQWVNNIVPTQMDLNRLFATMNTAGIQLEQADILKAKLFKHIHTDKAQY
DAMWVACEHLENYFERNVRKVFPNADWYHIEPEHLASFDAERFAAKDETSEALSGLSIAELASQVKASSIPDNTEQEKFE
TYDLDVETVYCRPIIKFPLLLIHAYRVYLALNDHNDIEPRLHSDRLLEIFDPLINGDEQSVKLFIETLWQVRYQFDRWVV
KWVECDDATDAQLGLTYQSRSKSNDTYYINRTQKELTDIVLLQSVRNFTGERSAQYWLTPFLSGLIRSSIKQDSVALELL
ENIDNKMSLSVDTQKEASFALAEGIEPNCQSWQSQSTYFAKSLGTSFEHYWFQKLEYLIWKKMKASESSLPSEELNKFKK
YRITSKNSVEHVHPQNDEYNSRLDCETLNSFGNLVLLSPGENSSYSNQDVDKKRIDFERKSHFDALKLREIFGVKGQGLW
GKQQIDNHLEDMMAVFAQHYKHQ
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