Name : VC0395_A1359 (VC0395_A1359)
Accession : YP_001217302.1
PAI name : VPI-2
PAI accession : NC_009457_P3
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Not determined
Product : hypothetical protein
Function : -
Note : -
Homologs in the searched genomes : 17 hits ( 16 protein-level, 1 DNA-level )
Publication :
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "A recalibrated molecular clock and independent origins for the cholera pandemic clones", PLoS ONE 3 (12), E4053 (2008) PUBMED 19115014.
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "Direct Submission", Submitted (18-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Heidelberg,J., "Direct Submission", Submitted (16-MAR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
| DNA sequence : | |
GTGGAGTTAACCTCTTTAATCAGCAAGTTCTTCTCTAGCTCAGATAAAACGTCTCAGTTTGAACTCATTTGTGATGATAG
TCTTGATTTTGCAACTTCCAGAAAAACTCTAGAGAAAATTAAAGCTGATGAGTGGATAACAGCGCAGTATGTTGCACTTA
AAATGCTTGAAGAGCAGGGGGATGTAAGCTCATTTCCAGATGGCTTCATTATGCCTGCCGATACAGCTGTCAGACTCGAT
TCTGAGTTGAGGGATTTGTTTAGTTTGCCCCCGGTTTGGAAAGGAGTCATTGACGCTGATATTCAAGGAAAAGCTAGTAC
ACCCACCTTTAAAATTGATCTTTCGGTCACAACCAAACAAGGTCGAACAACACTAAATTACACTGTGGATGGGCCTTTCA
TTCGGTTTAGTCAAAATGAGCAGTACCTGCTAACACCCGAGCAGCTTATGGTATTTATTGCGCATAAAACCCATGTAAGG
TCTGATAGGTCTGAATATGATAACTTACTGTACTTACACTCTTTGCAAGAGGCCCAAAAGAATGGTTGTAAGCTGAATCT
AAAGCACTTTGAAAGGCTAAGAATATTGACACCAAATAAAATCACAGTAGAAGCAGAATTGAATTCTCAAGGCGAGCTAA
TATTGACGCCAAACATGGGGCAAAGTGCGAGTCATGAGTCGATTCAAAAGGTTTTGGGGCAGTTGCAAAGCGACAACGCA
GTTACTCTGAAAGTGGGTGATGAAATAGTCTTATTTTCTGAAGAAAAGCTAATGGCTGTAAAAGAAGTTATTAGCAACAG
GGTAATTCCCCAACAGCAAGTTAAAGCGTTCCTGGAAAACCCTACAGCATATATTGATGCGAGTTTAGTCGATCTTGATT
TAGGTTTTTCTATCAGAGTTCATGGTGCGACAGTTTTTAAACATGCTTATTTTGGAGAAACGGACGAGTCAGGTATAGAT
TGGTTCGGAGCCTCCCCCACATCTGATTTGATTAATCCAATATCCAAGCTGACTGATAGAGTTCGCGATAAAACAACTCT
TGAGGACGTAGCTAAGAAGATTGAAGATGCACGACAAACCGGAGCAACCGTTTTTGATTATGAAGGACAATCATACGATA
TCAGCGATCCTGCAGCTGTTGAAAAAGTTCTAAACGAAATAGGTCACAAGATATCTAGCCCTAATACAGATCTTTCTAGC
TACGGAGAGGCAGAAGACGCCGAGACTGAATCAGAAGGCTCAGAAATACATGTTGTTGATATTGATCTAAATGACGAAGA
GCTGTCTGAAAATTCTCCTAAAGTTGAACAACTGATTTCTGATATTTCATGGGATGGTGAGTTAAATTGGGAAAACCACA
AGCGGACACCATTCCCACACCAGGATATTGGTGTTCGTTGGATTTTAGGCGTTGAACAAAAAAGCTTATCAGACTCGAAA
GTTAGTGGAGCCTTGCTAGCTGATGACATGGGGTTAGGTAAGACTTTTATGGCCCTCTCAGCAATAGAACATATTTATCA
ACGACAACAAATTAGTGGTGAAACGAAGAAACCTGCGTTGATAGTTGCTCCTTTGAGTTTATTGGAAAACTGGAAGGATG
AGGTAGATAAAACCTTTAAACACTCACCATTCAAAGATGTAGTTATTTTGCAATCATCCGCTGAGTTAAATGAGTATCGC
ATGGGGGGCGTAGAGATTCGAGGCCAGAGCGCATCTGATGATTGTTTAGAACCCAAATATTCTTTGAAAGTTGGGAAATA
CTTTGGTCCTAGCCGTTTAGATCTACCAGAGCGATTGGTAATCACTACTTATCAAACTTTGCGCGATTACCAGTTCTCCA
TGTGTTTGATTGATTGGGGGATCGTGGTTTTCGATGAAGCCCAGAACATTAAAAATCCAAATGCACTTCAAACTCGTGCT
GCGAAAGGCCTAAAAGCGGATTTCAAACTAGTGGCTACGGGTACGCCTGTAGAAAACAGCTTAGCCGATTTTTGGTGTTT
AATGGATACAGCTTGCCCAGGACATCTGGGTAGCTATCAAGAATTTCGTGCTCGTTATATCTCACCAATTCTTAAAGCTG
CTGGTGATGAAGTTGAAGAAATAAGAGCTAGGCTTGGAAGAGAACTTCGTATAGCTGTCGGGGCATTGATGCTTAGGCGC
ATTAAAGAGGACAACCTTAAAGGGTTACCTCTAAAACATATGTATGCTGGTGGAGAATTTGAAAACTGGAAGTATTTAGA
AGAACTTAAGTCGACAATGGTTGGCTACCAGAGAGATGTTTACGAAGGAGCGATTAGCCATCAACTCGAGAATGAAGAAA
GTCACGCGCTTACCACTTTGATGCGGCTAAGAGATAGTTCGTTACATCCTCGGTTAAGTGATGGAGGTCGCCTTGATATT
CCCAAAAATGCAAAATCAGCTAGAGCTCTATACGGAGAATCAGGAAAATTAGTTTCCTTGCTTGAGACTTTAGACAGAGT
ACGAAGCAAACAAGAAAAGTGCATTATTTTTGCGGTTAACAAACGACTGCAAAGTTTCTTAAGTGTGACTTTGGGGCAGA
TCTATAACCTAGGTCCGCTCTCAGTTATTAATGGTGATGCAAAAGCCGTAGCAAAGCGTAAATCTGTCCCAACTCGAAAA
TCAATGATTTCAGACTTCGAAGCAAAAGAAGGCTTTAATCTAATTGTAATGTCTCCAGTCGCGGCTGGTGTCGGTTTAAC
TGTGGTCGGTGCGAATCATGTGGTTCATTTAGAGCGGTACTGGAACCCAGCTAAAGAAGCTCAAGCTACGGATAGGGTTT
ATCGTATCGGACAGGAAAAAGAGGTTCATATCTACATCCCTCTGTTGCATCACCCTGAATTTGAATCATTTGATGTAAAC
CTACATAGGCTACTTACCCAAAAAACGTTGCTGAAGGATGCTGTTGTTACACCAGAAGATGTTATTCCACAGCCAGCAGG
TGTCGGGGGAGTAGTTTCTGGTGATTTGATTGATAAACGTATTACAGCGGCTGAACTTGATAAGTTAAGTTGGCAGCAAT
TTGAAGCGTTATGTGTAGAATTGCTTGCAAAGATTACGGATAGTGAAAGCGCTTGGTTGACGAACAATGGTGCTGATCAT
GGTGCTGATGGTGTACTACTTAATAACAGTGGTAATATTTTGCTTCAGGCTAAGTTTACGCAACGACAATATGATGGTTA
TAAAGGGATACAGGAGATTCATTCTGCTAAACCTATTTATGAATCAGCAATGAGAAGTTCTTTTGGGCGTTTGATTTTTG
TTACTAATTCACCTTTGTTAGCTAAGCGAACTCATGAAATTGCTGCCACATGTGGTATTGAAGTTTTGGGCAGAACACAG
CTGTTAACTTACCTTGAAGAATATGACATTACACTGAAAGACATTCTGTCAAGGTTGGGGAAAGATCGATTAAGAGTTTA
A
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| Protein sequence : | |
MELTSLISKFFSSSDKTSQFELICDDSLDFATSRKTLEKIKADEWITAQYVALKMLEEQGDVSSFPDGFIMPADTAVRLD
SELRDLFSLPPVWKGVIDADIQGKASTPTFKIDLSVTTKQGRTTLNYTVDGPFIRFSQNEQYLLTPEQLMVFIAHKTHVR
SDRSEYDNLLYLHSLQEAQKNGCKLNLKHFERLRILTPNKITVEAELNSQGELILTPNMGQSASHESIQKVLGQLQSDNA
VTLKVGDEIVLFSEEKLMAVKEVISNRVIPQQQVKAFLENPTAYIDASLVDLDLGFSIRVHGATVFKHAYFGETDESGID
WFGASPTSDLINPISKLTDRVRDKTTLEDVAKKIEDARQTGATVFDYEGQSYDISDPAAVEKVLNEIGHKISSPNTDLSS
YGEAEDAETESEGSEIHVVDIDLNDEELSENSPKVEQLISDISWDGELNWENHKRTPFPHQDIGVRWILGVEQKSLSDSK
VSGALLADDMGLGKTFMALSAIEHIYQRQQISGETKKPALIVAPLSLLENWKDEVDKTFKHSPFKDVVILQSSAELNEYR
MGGVEIRGQSASDDCLEPKYSLKVGKYFGPSRLDLPERLVITTYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQTRA
AKGLKADFKLVATGTPVENSLADFWCLMDTACPGHLGSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALMLRR
IKEDNLKGLPLKHMYAGGEFENWKYLEELKSTMVGYQRDVYEGAISHQLENEESHALTTLMRLRDSSLHPRLSDGGRLDI
PKNAKSARALYGESGKLVSLLETLDRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRK
SMISDFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAKEAQATDRVYRIGQEKEVHIYIPLLHHPEFESFDVN
LHRLLTQKTLLKDAVVTPEDVIPQPAGVGGVVSGDLIDKRITAAELDKLSWQQFEALCVELLAKITDSESAWLTNNGADH
GADGVLLNNSGNILLQAKFTQRQYDGYKGIQEIHSAKPIYESAMRSSFGRLIFVTNSPLLAKRTHEIAATCGIEVLGRTQ
LLTYLEEYDITLKDILSRLGKDRLRV
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