Name : acfB (VC0395_A0365)
Accession : YP_001216321.1
PAI name : VPI-1
PAI accession : NC_009457_P1
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Virulence
Product : accessory colonization factor AcfB
Function : -
Note : identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
Homologs in the searched genomes : 7 hits ( 7 protein-level )
Publication :
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "A recalibrated molecular clock and independent origins for the cholera pandemic clones", PLoS ONE 3 (12), E4053 (2008) PUBMED 19115014.
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "Direct Submission", Submitted (18-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Heidelberg,J., "Direct Submission", Submitted (16-MAR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
| DNA sequence : | |
ATGAAGTTTTCTATCAAGTTACTAATGATTTTTACATCAATTATAATTACTATTTCATCTATCCTTACTTACTTTCAGAT
GCATGGAACCAATGAATATCTTGATCGTACGATAAAAGATACTATTTCTGAAACGCTAGACTCTTTGGAAGATAAAATAA
ATCTTTCTATTGAGTCCAAGGTCGATGTGTCAAAATCTGTTATCGACATTTATGAAAATTTACTGGAGGGGGAATCCCCT
CTCAGTAAATTTAAGGATGTTGATGTCAATCATCTTTCAAATGTTTTTCAATTGTTCGGATATGCTGATGAAAGAACAGG
AGAGATCATTACTAATGACCCAAACTTTAAAGTGCCTACAGGATTCGATCCAAGGACTCGATCGTGGTATTTAAATGCAA
AAAAATTGAATACCTTTAGTTTGTCTGAGCCGTATGTCGATCTCATTACAGAGAAGTTAATGGTGACAACAAGTGCACCA
ATATATAATAAAAACGATTTAACAGGAGTTATATTTTTTGATATACCACTAGATGACGTTCAGGAATTAATTAAAAGCTA
CAATCCATTTGATGCCGGCACGATTTTTATCGTTGATAACAGTGGGAAAATAATTTTCGGTAATAAAAATGATATATCGG
GTAAAAATTTATTTGGAGACTTTGATAGCTTCCCTCTATCGGTAAGTGAGTCAAAAACGAAAGATAAAAATGGGGTAAAT
TACGATGTATTCATCAAAATGTCAGACTTTGGCGATTGGAATCTTGTTTCTATTATCGACCATGATAAAGCACGCTCTGA
TATTATCACGTTGAGAAACAATAGTATATTTACTGCCGTCATTTTAGCAAGTGTTTTCTTTGCTATCTTGTTGTTTACTA
TGCGGTTAATGCTGAAGCCATTGCATCAATTAACCGATGCAATGGTAAATATTTCATCGGGCAGTGCTGATCTTACGGTT
CGTATCCCGAATAGTACGGATCAAGAGTTTTCAAAAATAATAAATTCCTTTAACATTTTTGTTGGTAATCTGCAATCTAT
TGTGTCGGAGGTTAAAATGAACTCAGAAAAAATAAATTGCATAACTACTGAAACACAAGAGCTAGTCGAAGTTTGCAATA
ATAGCGTAGCTGATCAGTATCGTGAACTTGATATGCTAGCTAGCTCAATGAATGAGATGGTGGCAACATCTAATCAGATT
GCACAAATTACATCCGAAGCATCAGAGATCACATCTAAGATTAACGGTCAAGTGAATGAAGGAGTCGGTGCTGTTTCTTC
TGTTACCGAAAGTGTAGGTAATTTAGTTGAGAAGTTGGATAAGACGAAATCTGTTATCCAAGATCTTAATCGCCAAACTC
AAAATATAGATGTTATTTTGAAGGCTATTAATGATATTGCTGACCAAACAAACCTTCTTGCTCTTAATGCTGCAATTGAG
GCTGCACGAGCTGGGGAAAATGGACGAGGTTTTGCTGTGGTTGCTGATGAGGTACGCAGCCTAGCAATAAAGACACAAGA
GTCTACTAAAAATATAGGAAGTATTATCCATATATTACAAGAAAACTCTTTGCTATCCGTTCATGTTATGGATGAAAGTT
TTAATATTGCCTCTGAAACTATGACTATATCAGCTGATTCAAAACAATGTTTAGACAATATTAGTCAATCAGTAATACAA
ATTGTTGATATCACAAATCAAGTAGCTACAGCTGCTTACGAACAAAGTCACGTATCAGAGGAAATAAACAGCAACTCTAT
TTCTATAAAAGATAAAGCAGATACCTTATCAAGTTTGGGTAATAAGATTTCTCAACAGGCTTATTCTCAAAAAGCACTGA
TTGGTCATCAAGATGATTTAATCAGTAAGTTTATCATTTAA
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| Protein sequence : | |
MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESKVDVSKSVIDIYENLLEGESP
LSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPTGFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAP
IYNKNDLTGVIFFDIPLDDVQELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNGVN
YDVFIKMSDFGDWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLMLKPLHQLTDAMVNISSGSADLTV
RIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINCITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQI
AQITSEASEITSKINGQVNEGVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIE
AARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASETMTISADSKQCLDNISQSVIQ
IVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLGNKISQQAYSQKALIGHQDDLISKFII
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