Name : tagA (VC0395_A0345)
Accession : YP_001216301.1
PAI name : VPI-1
PAI accession : NC_009457_P1
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Virulence
Product : ToxR-activated gene A protein
Function : -
Note : identified by match to protein family HMM PF00041
Homologs in the searched genomes : 6 hits ( 6 protein-level )
Publication :
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "A recalibrated molecular clock and independent origins for the cholera pandemic clones", PLoS ONE 3 (12), E4053 (2008) PUBMED 19115014.
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "Direct Submission", Submitted (18-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Heidelberg,J., "Direct Submission", Submitted (16-MAR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
| DNA sequence : | |
ATGATTTTTTCGAAAAATGTTTACGAGGAGTTAGTGGTGGTAAGATATTCACTCTTAATGAAAGTTTCTTTTGCAATACT
TATTTTCTTAGTTGGATGTAATGAGAATGCAACATCCAGTAACGACCAGTATTTGACTGATCCTGATATAAGTGAACAAA
CAAAGAAGCCATCAAGGCCTATAATTGATGAAAAAAATAAAGGTGTAACAGATACTTCGGTTACAATAGAATGGGATAAG
ATTGAGTGTGAAAAAAATTTTAGTCATTATAATGTAATTGTCTATAGAAAAGATCGAATAGAAGATGTAATAACTATCAG
AACTAGGAATAATAGTGTTTTTATCGATGATTTAAAACCTAACAGCCAGTATTCTATAGATGTCTCAAGTTGTTTACACT
CTGCTTGTTCAGAAAGCGCAAAAATAGAATTCATTACGTTGAACGAGATAGATTATTATCACACCACAGAAATAGAAAAA
AATGTGTATGGAAGCTTGGAAGGTGAAGTTAGATTTGTGCAAACGCATGTCATTTCTCCTGAGGGTAGAAAGAATGAGCC
TGAAATAATCACAGGAAGAGATGCATTAATATTGTTTAAGCCATCAATAAAAAACTCAAGTTCAATTTTGATGAAAATTT
ATTCAGAAGATGGACTCACTAGCAAAGTTGTAATGAAATCACCATCTATGTTGCCAAAAACTGATCAACCAATAGATATT
GATGAAAATAATAAAGTTGTAAGTTACTCTAACTCATATTGGAGTGCAGAGATACCATGGAATAAAATGAAAAGTGGTAT
GTCATTACATTTTGAAGACGAAAACGGCAACTTAGGTATTATTGAGTCAGAACGTATAAAATTTTCAGCACCTAGTGAAT
TGATTATTCAAAATATAGATCTTGGAATGTTATATAAACCAAGAGGAAGAAATATCGTAATAAAAGAATTGGAAAGAACA
GCCGTTGATTACTTTCAGAAAGTTCCTGTCTCAAAGTTGATTTTTTCAGATTATACCCCTATTCATTTTGAAAAAATAAC
ATTACCAAATGGTTCAGTATATACTGAGAAAAGTGCTGATATAGGTGGATGGCATCAAGGTGATATGAGAGAAGCAGTAG
GGAAAGCACTAGTATCTACCGGAATAAATAATGCTAATTTAGGTATAGTTGCCTCGTCAGGATATTCTCAACAATACAAC
AGATTAACGAATCATATTACCGCACACACAAATATTGGATATTATAACAATGGAGTGGTTGTGCATGGAGGGAGTGGTGG
TGGTGGGATCGTTACACTAGAAAATACACTTCATAACGAATGGTCTCATGAATTGGGACATAACTATGGATTGGGACATT
ATGTTGCAGGTGGTACTAGTCATGGACCTGATACTTCATGGGGTTGGGATGGCTATTATAAAAGATTCATAGCTAACTTT
GATTGGAAACGTTCACCACAATCAAATATAAGGCCAGATAATCAAGAAGTTGTTAAGCCCTTCATGGACAAGTATACATA
TCTTTGGGATGCAATGTCTGGAGGATATGACCATCAAAATGGAATCATTAGTAGATATACACTTCATCATCCATATGTTG
CAAGAATTATCCAAGATTGGCTTAAAAATGGGGCTGTTGTAATAAATAATGATTATATGGTTTGGGATGAATTAAAAAAT
ATCTATGTGTATAAGGGAACGAACTTCAAAGTTCCAATAAAAAAAGGTGTACCTGTTGTGACGATATTAGGGGTTTATGA
TCCTGACAAAATTAATCCAAGTCAATTGTATCCTCCGACATACAGCAATTATGGAAATATATTCGATTTAGAAAAACCTC
GTTCAGAATCATCCTTAAAAGGGTGGCAATATGTTAAAGATGTCAACTATCTAGATAGAGTTAATACACATTGGCATACG
ATGCTCGTAAATAGAAAAGAAGAAAAAATATGTCGATTTTCTTATCTAAGCCCTAAAGGTAAAAAATTTGAATTTCTAGG
GTATGAAGACATTGAGAATAAAATATGCACAGGAAGTAGAAGTATTCACTATTTAGAAGACGGCAAGAAAAATCCAATAG
AATCCAAGTATAATGATTATTTTTTATTATCAATAGATGGTGATGGAGAAATAAGTTATGTTCCTGATTCTACTATTGGT
GAAAGTAAAATATGTTCACTAAAGATGTCTGGTACTGTATACGGTGCAGGTTTTATTAAAGGAAACTCTTGTCGGCAAAT
TGACGGTGTTTTTATGAACGGATTTCAATGGGCTTTTACATTAAATCAATCAGGAGTAAATAGTACCTATACATGGTCAA
ATGAATGTGTATTAAAAATTAAAGATAAAGATAATAATATTGAATCAATATCGATACCAAATTATAGAATAGAAAAAAAT
CAGAGTAATAAAATTCATCTTAATATAAGCAGAGAAAAGCCCATAATAGATATTAACGTGTATTGTGGAGAACATGAGTT
AACTAGCATAAAGGTTTCTGATAATCCTGATATAAAATTACTAAAAGGACCTATTATTGTTGGGCAAGAGCATGGTTACA
CAAGCTATGAGCCTAAGCTTCCTAGTGGTTGGTTCAAACATTATGACAATTTTGAACCCAAAAATGAAATCAACCATGAA
TTAGGAAAGATGCGTGTAAATGATAATGATGAATATATTTGTCGATTTAATTTTTCTGATTCAGATAGGGAAATGAAATT
TGTTGGTTATGTGAGTCAATTATCTGAAAGTAAGTACATTTGTACTGGTGGAAGTGAGATCTATTACAAGAAAAACGACA
TTAATATTGAACTATCATCAAAAGAAAACGATTTTGAATGGTTATCAGTAAGAGATAAAAATTTGATAGGTTCAAAAATA
GAATTTGATAACAATAAGACATTGTGCGTATTAGATAATAGATCATTTTATGGTGCTGGTTACCTCGATGAAAACAATAG
ATGTACACAAGATAGACAAATTCATTGGTCTAATGGTAAACAATGGTTATTTAGTACTTATAAAACGATGACCTACCATT
AA
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| Protein sequence : | |
MIFSKNVYEELVVVRYSLLMKVSFAILIFLVGCNENATSSNDQYLTDPDISEQTKKPSRPIIDEKNKGVTDTSVTIEWDK
IECEKNFSHYNVIVYRKDRIEDVITIRTRNNSVFIDDLKPNSQYSIDVSSCLHSACSESAKIEFITLNEIDYYHTTEIEK
NVYGSLEGEVRFVQTHVISPEGRKNEPEIITGRDALILFKPSIKNSSSILMKIYSEDGLTSKVVMKSPSMLPKTDQPIDI
DENNKVVSYSNSYWSAEIPWNKMKSGMSLHFEDENGNLGIIESERIKFSAPSELIIQNIDLGMLYKPRGRNIVIKELERT
AVDYFQKVPVSKLIFSDYTPIHFEKITLPNGSVYTEKSADIGGWHQGDMREAVGKALVSTGINNANLGIVASSGYSQQYN
RLTNHITAHTNIGYYNNGVVVHGGSGGGGIVTLENTLHNEWSHELGHNYGLGHYVAGGTSHGPDTSWGWDGYYKRFIANF
DWKRSPQSNIRPDNQEVVKPFMDKYTYLWDAMSGGYDHQNGIISRYTLHHPYVARIIQDWLKNGAVVINNDYMVWDELKN
IYVYKGTNFKVPIKKGVPVVTILGVYDPDKINPSQLYPPTYSNYGNIFDLEKPRSESSLKGWQYVKDVNYLDRVNTHWHT
MLVNRKEEKICRFSYLSPKGKKFEFLGYEDIENKICTGSRSIHYLEDGKKNPIESKYNDYFLLSIDGDGEISYVPDSTIG
ESKICSLKMSGTVYGAGFIKGNSCRQIDGVFMNGFQWAFTLNQSGVNSTYTWSNECVLKIKDKDNNIESISIPNYRIEKN
QSNKIHLNISREKPIIDINVYCGEHELTSIKVSDNPDIKLLKGPIIVGQEHGYTSYEPKLPSGWFKHYDNFEPKNEINHE
LGKMRVNDNDEYICRFNFSDSDREMKFVGYVSQLSESKYICTGGSEIYYKKNDINIELSSKENDFEWLSVRDKNLIGSKI
EFDNNKTLCVLDNRSFYGAGYLDENNRCTQDRQIHWSNGKQWLFSTYKTMTYH
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