Name : SSU98_0975 (SSU98_0975)
Accession : YP_001200533.1
PAI name : 89K
PAI accession : NC_009443_P1
Strain : Streptococcus suis 05ZYH33
Virulence or Resistance: Not determined
Product : SNF2 family protein
Function : -
Note : -
Homologs in the searched genomes : 8 hits ( 7 protein-level, 1 DNA-level )
Publication :
-Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. CONSRTM BGI, "A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates", PLoS ONE 2 (3), E315 (2007) PUBMED 17375201 REMARK Publication Status: Online-Only.
-Chen,C., Tang,J., Dong,W., Wang,C., Feng,Y., Wang,J., Zheng,F., Pan,X., Liu,D., Li,M., Song,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Dong,Y., Sun,W., Jiang,Y., Wang,J., Yan,J., Yang,H., Wang,X., Gao,G.F., Yang,R., Wang,J. and Yu,J. CONSRTM BGI, "Direct Submission", Submitted (08-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Chen,C., Tang,J., Dong,W., Wang,J., Wang,C., Pan,X., Zheng,F., Song,Y., Dong,Y., Zhu,X., Sun,H., Feng,T., Guo,Z., Ju,A., Ge,J., Wang,J., Wang,X., Gao,G.F., Yang,H., Yang,R., Wang,J. and Yu,J., "Direct Submission", Submitted (27-JUN-2006) Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 101300, China.
| DNA sequence : | |
ATGAATCAAGAAGTCTTACTACAAATGATGAGAGCAACCATTCCTCGTGATAGAGCCTTGCTTGAAGCGTTTTTATATTA
CCAAGCAGAGCATTTTGATGAGGAGTGGGATAGTCTCGTTTATCAGTTTATGACCAATAGGCAGGGAATCAAAAGATCTG
TTCAGGTACTTCACTTTGAGACAGATGTTTCAGCTTTTGTCCAGGCTAGTCCTTATGATACTGCTCATGATCTATTGACC
TATACACAAGTTTTCGGCCAAACTGGTCTCCAAAAACTCGACAAACTATCGCCGTCTGAAAAAGACTTGGTGATTGAAGT
GGCCTTGTTCAATCTGGCCACTCGTTTTCAACTATTAGACTCAAATGGACACTACCAAACTATTTCACCAGATTCTCTAT
TACAAAAGAGTAGGGGAGCTAATTTGGTCAATGTTTATCGTGTGGCAAATAATTTAGCGGATCGGATTAGTCGAGATATT
GAACAGTTTCTCTTAACTTACGAGCCTGAGCTTGAAATAAAAGTAGATGAAACAGTTCTAGAAAATGAAGAAACTGGTGA
TGAGCACAAAGCTAGTGTTCATCAAGCAATATCATTTAGAGAAGATGGCTCTCTCATCATTGCTAGTTTGGATGTAGATT
TGTCTCAACTAGATGTTCAAACAGGAAAAACAAGTCATCTGCCAGCTTATGAAGCGTTATCTTTACGACGTAAATTTGAG
ATTCTAACATATTTTGACCAAATTCGAAATGAACGTTCCAAAGTCCCAAGTTTTAGACGAGGTGATTTTGATACTGAGAC
GGAAATGACACCAGTCTTTGAGGGCGAGGAGTTACTTACCTATCTAGAAGCTGATGGCACTCCCTATGAGCTGAAACGAA
CGCTGACCACAGTCGAAGAAAAGGAATTAGAAAAAATTGGACAAGCCATTTGGATAGAAAATCAAGAAAAATTGACTCAG
CTAGGGATTGAGCTATCTCAGTTTGAATCAGACCAAGTCGGTATTTTATTGGATGCGGCAGGTCGTTTTCGTTTGAAAAA
TGCGGACCTTGCTTTACTAGGTGGCTATCCCAAAGCCTCGGTAACTCAACTAGCCCTTGCGACAGAACTACTCCAAATGG
GATTGAGTCATGAAAAGGTTGAATTTTTCTTTGGTAGCCAGCTTTCCATTGAAGAGCTGCGACAAGTTGCCTACGCCTTT
TTACACCAAGAACTCAGCAGAGAAGATGCGGAGCAATTTGAAAAAGATAAACGCAATCAGCCAGATTTAACCCTCAGAGA
TTGGAAAAGCAAGCTAGAGAAAGCTGAGTCGAAAGTAGTAGTTGATGAAGAATTCGCGGAAAATCCACTAGTCCAGAGAG
TATTGGACACTTATCCTCTGGGGTCATTGGTTTCCTATAAGGGACAGGACTTTGAGGTCGTGTCGGTCAGCGATGCTCGA
TTGAACGGTTTGATTCGGATTGAGTTAGTCAATGATTTTTCGGATATCATTGAACAAAATCCAGTTCTTTATATGAGGAC
CTGGGAAGAAGTCAGGCAGGCACTTCATCAGCTAAAGGCAGAAAAACAAACAGAGTTAGAAGAAGCGGACCAAGAATTAA
ACCTATTCTCATTTCTGGAAGAGGAGCCAGTTCAGAGTATTGGACTATTGGAACCAGATGGTTCAGAAAAAGGTCATAAC
GATACTGAACTTGAAGAATCAGATAATCAAATTCCTGAAGAGGAAGTCGTCGAAACAATTCCAGAGATTCCAGTAACGGA
CTTTTATTTTCCAGAAGATATGACGGACTTTTATCCAAAGACTGCTAGAGATAAGGTTGAGACAAACATTGCGGCCATTC
GTTTGGTAAAAAATCTAGAAGTAGAGCACCGCAATGCTTCATTAAGTGAACAAGAACTCCTTGCCAAGTATGTGGGCTGG
GGTGGACTTGCCAATGATTTCTTTGATGACTATAATCCAAAATTTTCTATGGAACGAGAAGAACTGAAAAGCCTAGTCAC
TGATAAAGAGTATTCGGATATGAAACAGTCCTCCCTGACAGCCTATTACACAGACCCTGCCCTGATTCATCAGATGTGGG
ATAAGTTGGAAAGAGACGGCTTTACAGGTGGCAAAATCCTACATCCTTCCATGGGAACAGGGAATTTCTTTGCGGCTATG
CCCAAACACTTAAGAGAAAAGAGTGAGCTATATGGCGTAGAGCTAGATACCATTACAGGAGCCATTGCCAATCACCTTCA
CCCGAATAGCCATATTGAAATTAAGGGCTTTGAGACGGTGGCTTTTAACGACAATAGTTTTGATTTGGTGATTTCAAATG
TGCCGTTTGCCAATATACGAATTGCGGATAACAGGTACGATAAGCCTTATATGATTCATGACTACTTTGTCAAAAAGTCA
CTTGATTTGGTCCATGATGGTGGACAAGTAGCGATTATCTCTTCCACAGGAACCATGGATAAGCGAACAGAAAACATCTT
ACAAGATATTCGTGAGACAACTGAATTTCTTGGAGGGGTTCGATTGCCTGACTCTACCTTTAAGGCCATTGCAGGAACGA
ATGTTACAACGGATATGTTGTTCTTCCAGAAACACTTGAACAAGGGATATGTGACAGATGACTTAGCCTTTTCAGGTTCC
ATTCGTTATGAAAAGGATAGTCGCATTTGGCTCAATCCTTACTTTGATGGAGAATACAATAGCCAAGTGCTAGGAACCTA
CGAGGTCAGAAATTTTAACGGCGGAACACTTTCTGTTAAGGGGACTAGTGACAACCTCATCGCAAGTGTTGAAACTGCTC
TACATCAAGTAAAAGCCCCAAGAGAGATTGATAGAAATGAAATCATCATTAATCCAGACATATTGACCAAACAAGTCATG
GATACTTCCATTCCAGCTGAAATGAGGGAGAATCTGGGTCAGTACAGTTTTGGTTACCAGGGTTCTACAGTTTACTATCG
AGATAACAAAGGCATTCGAGTGGGGACCAAGACGGAAGAAATCAGTTATTATGTCGATGAAGAGGGCAACTTCAAAGCAT
GGGACACCAAGCATTCTCAAAAACAGATTGATAGATTTATTAGCTTAGAGGTGACTGATAGCACTGCTCTAGATGTTTAT
GTGACCGATGATGCAGCCAAACGTGGTCAGTTTAAGGGTTATTATAAAAAGACAGTTTTCTATGAAACTCCCTTGTCTGA
GAAAGAAGTGGCACGGATTAAGGGAATGGTCGATATTCGCAATGCCTACCAAGAAGTTATTGCCATTCAACGCTATTATG
ACTATGATAAGGAGACCTTTAACCACTTGTTAGGCAAACTCAATCGTACCTATGATAGCTTTGTCAAACGCTACGGGTAT
TTAAACAGTACAGTGAACCGCAATCTTTTTGATAGTGATGATAAGTATTCGCTTCTGGCTAGTTTGGAAGATGAAAGTCT
AGATCCAAGTGGAAAGTCTGTTATCTATACTAAATCCCTTGCCTTTGAAAAGGCTCTAGTGCGTCCTGAAAAAGAGGTTA
AAAAGGTACATACTGCCCTTGATGCCTTAAATTCCAGTTTGGCTGACGGACGTGGTGTTGATTTCGCTTATATGATGTCT
ATCTATCAGGTTGAATCGAAGATGACCTTGATTGAGGAGTTAGGTGACCTCATTATGCCTGATCCTGAGAAGTATTTGAA
TGGGGAACTGTCCTATGTTTCTCGCCAAGACTTTCTGTCAGGTGATGTCGTCACTAAGTTAGAAGTGGTGGACCTATTCG
TGAAACAAGACAATCAGGACTTTAACTGGCCGCATTATGCAGGACTTCTAGAAACAGTCAAACCAGCACGCATTACTTTA
GCAGACATTGATTATCGAATCGGTTCACGCTGGATTCCTTTGTCTGTTTACGGAAAATTTGCCCAAGAAACCTTTATGGG
GAAAGCCTATGAACTGTCAGACCAAGAAGTAACAACAGTCCTTGAAGTCAGTCCCATTGACGGAGTTATCACTTACCAAT
CTAAGTTTGCCTATACCTATTCCAACGCAACGGATAGGAGTTTAGGTGTACCAGGTTCTCGTTATAATAGTGGTCGTAAA
ATATTTGAAAATCTCCTGAATTCCAATCAACCAACCATCACAAAACAAATTGTCGAAGGGGATAAGAAAAAGAATGTGAC
GGATGTGGAGAAAACAACAGTCCTGCGTGCCAAGGAAACACACCTACAAGAACTCTTTCAAGATTTTGTAGCAAAATATC
CAGAAGTCCAACAGATGATTGAAGACACCTATAACAGTCTCTATAATCGTACAGTATCAAAGACCTATGATGGTAGCCAT
TTAACCATTGATGGACTTGCCCAGAATATCTCCTTACGTCCCCACCAATAA
|
| Protein sequence : | |
MNQEVLLQMMRATIPRDRALLEAFLYYQAEHFDEEWDSLVYQFMTNRQGIKRSVQVLHFETDVSAFVQASPYDTAHDLLT
YTQVFGQTGLQKLDKLSPSEKDLVIEVALFNLATRFQLLDSNGHYQTISPDSLLQKSRGANLVNVYRVANNLADRISRDI
EQFLLTYEPELEIKVDETVLENEETGDEHKASVHQAISFREDGSLIIASLDVDLSQLDVQTGKTSHLPAYEALSLRRKFE
ILTYFDQIRNERSKVPSFRRGDFDTETEMTPVFEGEELLTYLEADGTPYELKRTLTTVEEKELEKIGQAIWIENQEKLTQ
LGIELSQFESDQVGILLDAAGRFRLKNADLALLGGYPKASVTQLALATELLQMGLSHEKVEFFFGSQLSIEELRQVAYAF
LHQELSREDAEQFEKDKRNQPDLTLRDWKSKLEKAESKVVVDEEFAENPLVQRVLDTYPLGSLVSYKGQDFEVVSVSDAR
LNGLIRIELVNDFSDIIEQNPVLYMRTWEEVRQALHQLKAEKQTELEEADQELNLFSFLEEEPVQSIGLLEPDGSEKGHN
DTELEESDNQIPEEEVVETIPEIPVTDFYFPEDMTDFYPKTARDKVETNIAAIRLVKNLEVEHRNASLSEQELLAKYVGW
GGLANDFFDDYNPKFSMEREELKSLVTDKEYSDMKQSSLTAYYTDPALIHQMWDKLERDGFTGGKILHPSMGTGNFFAAM
PKHLREKSELYGVELDTITGAIANHLHPNSHIEIKGFETVAFNDNSFDLVISNVPFANIRIADNRYDKPYMIHDYFVKKS
LDLVHDGGQVAIISSTGTMDKRTENILQDIRETTEFLGGVRLPDSTFKAIAGTNVTTDMLFFQKHLNKGYVTDDLAFSGS
IRYEKDSRIWLNPYFDGEYNSQVLGTYEVRNFNGGTLSVKGTSDNLIASVETALHQVKAPREIDRNEIIINPDILTKQVM
DTSIPAEMRENLGQYSFGYQGSTVYYRDNKGIRVGTKTEEISYYVDEEGNFKAWDTKHSQKQIDRFISLEVTDSTALDVY
VTDDAAKRGQFKGYYKKTVFYETPLSEKEVARIKGMVDIRNAYQEVIAIQRYYDYDKETFNHLLGKLNRTYDSFVKRYGY
LNSTVNRNLFDSDDKYSLLASLEDESLDPSGKSVIYTKSLAFEKALVRPEKEVKKVHTALDALNSSLADGRGVDFAYMMS
IYQVESKMTLIEELGDLIMPDPEKYLNGELSYVSRQDFLSGDVVTKLEVVDLFVKQDNQDFNWPHYAGLLETVKPARITL
ADIDYRIGSRWIPLSVYGKFAQETFMGKAYELSDQEVTTVLEVSPIDGVITYQSKFAYTYSNATDRSLGVPGSRYNSGRK
IFENLLNSNQPTITKQIVEGDKKKNVTDVEKTTVLRAKETHLQELFQDFVAKYPEVQQMIEDTYNSLYNRTVSKTYDGSH
LTIDGLAQNISLRPHQ
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