Name : hsdR
Accession : BAH57699.1
PAI name : Type-VII SCCmec
PAI accession : AB462393
Strain : Staphylococcus aureus 04-02981
Virulence or Resistance: Not determined
Product : type I restriction-modification system endonuclease homologue
Function : -
Note : ORF No.32
Homologs in the searched genomes : 198 hits ( 197 protein-level, 1 DNA-level )
Publication :
-Higuchi,W., Takano,T., Teng,L.J. and Yamamoto,T., "Structure and specific detection of staphylococcal cassette chromosome mec type VII", Biochem. Biophys. Res. Commun. 377 (3), 752-756 (2008) PUBMED 18926798.
-Takano,T., Higuchi,W., Otsuka,T., Baranovich,T., Enany,S., Saito,K., Isobe,H., Dohmae,S., Ozaki,K., Takano,M., Iwao,Y., Shibuya,M., Okubo,T., Yabe,S., Shi,D., Reva,I., Teng,L.J. and Yamamoto,T., "Novel characteristics of community-acquired methicillin-resistant Staphylococcus aureus strains belonging to multilocus sequence type 59 in Taiwan", Antimicrob. Agents Chemother. 52 (3), 837-845 (2008) PUBMED 18086843.
-Yamamoto,T. and Higuchi,W., "Direct Submission", Submitted (28-SEP-2008) Contact:Tatsuo Yamamoto Niigata University Graduate School of Medical and Dental Sciences, Division of Bacteriology, Department of Infectious Disease Control and International Medicine; 757 Ichibanchou, Asahimachidori, Niigata, Nii.
| DNA sequence : | |
ATGAACTTTCAATTTAATGAAGATGATTTAGAACAAGTCGCATTAGAATGGCTACAATCACTAGGCTATGACTATAAAAA
AGGTAATGAGATTAGTATGACAAGTCTAACACCAGAACGTAAAAGTGATAAAGATGTTGTCCTTCATGAACGTTTAGAGA
AAGCATTAAGAAAAATCAACTCAGATATCCATCCTCGTTTTATTGAAAAAGCGCTACATGAACTAACTTTAGAGAAGTCG
CCCAATCTTTTAGAAAATAACCTTACCTTTCATGAAAATTTGATTAATGGTATTGAAATCGAAGACTATGATGATGAAGG
ACAATCGATTGTAGAAATTGTTAAAATTATTGATTTTGAATATCCACAAAACAATGATTTTTTAGCAGTCAATCAATTAA
CTATCGTTAATGGAGACTATAAAAAACGTCCCGATATTGTACTCTTTATCAATGGCTTGCCTATCGTAGTGATTGAACTT
AAAAATTCAACAAATGAAACCGTGGGCGTCGAAGACGGTTATCATCAATTAGAAACGTATAAGATGCGTATTCCACAATT
ATTTACGTTTAACGAAGTGCTTGTTACAAGTGATGGTATTAATACAAAGGCTGGCTCTCTAACCGCAAATTATGATCGGT
TTATGACTTGGCGCAGTAAAGATGGTCAAACTGAATCATCACCAGGTTTAGCTAGCTTAGACGTACTCATTCATGGCATG
TTAAATCCAGAAACATTACTTGATTTAATTCGATATTTTGTTTTATTTCAAGATGATGGCAAAGGACATATCAGTAAAAT
TCTAGCAGCGTATCATCAATATTATGCCGTTAATAAAGCCGTTGACAGAGCTTTATTAGCTTCATCTGAGCAAGGTGATG
GTAAAGGCGGCGTTATTTGGCATACCCAAGGGTCCGGTAAAAGTTTAACCATGGTCTTTTTCTCTGGAAAATTAATTCAA
ATGCTGAATAACCCTACCTTAGTCGTCGTAACGGATCGTAATGATTTAGATAACCAACTGTACAGTACGTTTGTTAAATC
AAAAGGACGTTCTGGTAAAGGATTATTAAGACAAACACCAAAACAAGCTGAAACACGTAAAGAATTAAAATCATTATTAT
CTGTTGAGTCGGGTGGTATTGTATTTACAACGATGCAAAAATTTGAACCTGAACAAAACGAAACGACCATGGCTGCCCTA
ACAGAACGAAAAAATGTGATTGTCATGGCAGACGAAGCTCATCGTACACAATATGGCTTTAACGCAAAATACGATGATAA
AGGTGAAGGCATTAAATATGGTTATGCCAAATATTTAAGAGATGCTTTACCGAATGCAACATTCGTAGGATTTACAGGCA
CACCCGTAGCTTCAACGGATAAAAATACGCAAATGGTTTTCGGAAACTATATCGATGTTTATGATATGACACAAGCCGTC
GCTGATGGAAGCACCGTTAAAATTTACTATGAAAGTCGTGTAATTCCATTAAATCTACCTCAAAGTTTAGATTTAGATGA
AGCGTATAATGACATTACTGAAGATCAAGAAGAGGATGTAAAACAGCGTTTAAAATCAAAATGGTCCCGTATTGAAGCTT
TAGCAGGCGCAAAACCTCGTGTAGAAGCCCTAGCCAAAGATATCATCCAACACTTTGAAACACGTCAACAAGCGATGAAA
GGCAAAGGAATGATTGTAACGATGAGTCGTCGAATTGCTGTTGATTTATATGATGAAATCATTCGTCTAAAACCAGAATG
GCATTCAGATGATGATGATAAAGGAGTCATTAAAGTGGTAATGACAGGCTCATCTAGTGACCCAACTTCTTTCCAAAGAC
ACATTGGTCCTAAAAAACGCCGTAATTTATTAGAAAAACGTATGAAAGATGTGGATGATGAGTTACAACTCGTGATTGTT
CGAGATATGTGGCTGACAGGGTTTGATGTTCCTTCTATGCATACGATGTATATTGATAAACCGATGAAAGGGCATAATTT
GATGCAAGCAATTGCTCGAGTTAATCGAGTGTTTAAAGATAAGCCGGGTGGTTTAATTGTCGATTATGTGGGGATTGCCG
AAAGTTTAAAAGAGGCACTTAAAGAATATACAGAATCTGATCAAGCTCAAACGGCAATAGATACGGATAAAGCGGTTGAA
TTGATGTTATTGAAGTATGATGTAATTCAAGATATGTTATATAATCTTGATTACTCTAAATTTAATTCAGATAAAAAATC
TGAACGTTATTATACAATATCGAATACGATGGATTATGTAATTGGTTTAGGTGAAGATGAACGTCAACGTTTTATTAAAA
CAGTCACAGAATTAGGGAAAGCCTTTGCTCTTTGTGCGACTGAACCTACAGCCCAAGAACTCAACGATGAGATTGCCTTC
TTTAAAGCAGTTAAAGCAGGACTTGTTAAATTGTTACAACCGCCAAAAGAAGGAAAAACACGTAAAACACCTGCAGAAGT
TGAAGCAGAGATTAATCAACTTGTGTCACAATCTGTTGTGACTGAAGATGTCATTGATGTTTATCAAACGCTAGGTCTTG
AACAACCCGATTTATCAATCTTATCTGATGACTTTTTAAAAGATGTCGAAGGATTGAAACAGAAAAATGTGGCGGTAGAA
TTATTAAATCGATTACTCAAAGGACAAGTTAAATCATTAATGAAAACGAATGCAACGGTATCTAAGCGTTTCTCTGAGAT
GTTAGGAAATTCGATTAATAAATATAATAGTCGTTCCATTGAAACATCTAAAGTGATTGAAGAACTTATTCAACTCGCTA
AAGATATTAAACAAGAACAACAACGAGGAAATGAATTAGGCCTGAATTCAGATGAGATTGCGTTTTACGATGCTTTAGCT
TCACATGAAACAGCAAAAGAAGCCATGGGAGATAAAGAACTACGTGCGATTGCTCATGAGCTAACTAAAACAGTGAAAGA
AAACATGGGTGTTGATTGGTCTAAACGTGATAGCGCAAAAGCTAAAATGCGCGTAGCTGTTAGACGATTGCTTAAAAAAT
ATGGCTATCCACCAGATTTACAAAAAATGGCTGTAGAGCAGGTTGTAGAGCAAGCAGAACTTATGGCGAATAATCAATAA
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| Protein sequence : | |
MNFQFNEDDLEQVALEWLQSLGYDYKKGNEISMTSLTPERKSDKDVVLHERLEKALRKINSDIHPRFIEKALHELTLEKS
PNLLENNLTFHENLINGIEIEDYDDEGQSIVEIVKIIDFEYPQNNDFLAVNQLTIVNGDYKKRPDIVLFINGLPIVVIEL
KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLVTSDGINTKAGSLTANYDRFMTWRSKDGQTESSPGLASLDVLIHGM
LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSEQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ
MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIVFTTMQKFEPEQNETTMAAL
TERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV
ADGSTVKIYYESRVIPLNLPQSLDLDEAYNDITEDQEEDVKQRLKSKWSRIEALAGAKPRVEALAKDIIQHFETRQQAMK
GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNLLEKRMKDVDDELQLVIV
RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE
LMLLKYDVIQDMLYNLDYSKFNSDKKSERYYTISNTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAF
FKAVKAGLVKLLQPPKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVE
LLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALA
SHETAKEAMGDKELRAIAHELTKTVKENMGVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMANNQ
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