Name : hsdR
Accession : BAD24840.1
PAI name : Type-V SCCmec
PAI accession : AB121219
Strain : Staphylococcus aureus 04-02981
Virulence or Resistance: Not determined
Product : type I restriction-modification system endonuclease homologue
Function : -
Note : ORF No. V021
Homologs in the searched genomes : 197 hits ( 196 protein-level, 1 DNA-level )
Publication :
-Ito,T., Ma,X.X., Takeuchi,F., Okuma,K., Yuzawa,H. and Hiramatsu,K., "Novel type V staphylococcal cassette chromosome mec driven by a novel cassette chromosome recombinase, ccrC", Antimicrob. Agents Chemother. 48 (7), 2637-2651 (2004) PUBMED 15215121.
-Xue,M.X., Ito,T., Okuma,K. and Hiramatsu,K., "Direct Submission", Submitted (26-SEP-2003) Contact:Teruyo Ito Juntendo University, Department of Bacteriology; Hongo 2-1-1, Bunkyo-ku, Tokyo 113-8421, Japan.
| DNA sequence : | |
ATGAACTTTCAATTTAATGAAGATGATTTAGAACAAGTCGCATTAGAATGGTTAGAATCACTAGGCTACGACTATAAAAA
AGGTAATGAGATTAGTATGACAGGTCTAGCGCCAGAACGTAAAAGTGATAAAGAAGTTGTCCTTCATGAACGTTTAGAGA
AAGCATTAAGAAAAATCAACTCAGACATCCATCCTCGTTTTATTGAAAAAGCGATGCATGAATTAATTTTAGAGAAGTCG
CCCAATCTTTTAGAAAACAACCTTACCTTTCATGAAAATTTGATCAATGGTGTTGAAATCGAAGACTATGATGAGAAAGG
ACAATCGATTGTAGAAATTGTTAAAATTGTTGATTTTGAACATCCACAAAATAATGATTTTTTAGCTATTAATCAATTGA
CTGTTGTTAATGGAGATTATACCAAACGTCCCGATATTGTCCTCTTTATCAATGGCTTGCCTATCGTTGTGATTGAACTT
AAAAATTCAACCAATGAAACCGTGGGTGTCGAAGACGGTTATCATCAATTAGAAACGTATAAAATGCGTATTCCACAATT
ATTTACATTTAACGAAGTGCTTATTACAAGTGATGGTATTAATACAAAAGCTGGTTCACTAACTGCGAACTATGATCGTT
TTATGACTTGGCGTTCCAACGATGGAGAAACTGAATCATCCTCAAGTTTAGCTAGTTTAGATGTGCTGATTCATGGGATG
TTAAATCCTGAAACACTACTTGATTTAATTCGATATTTTGTTTTATTTCAAGATGATGGCAAAGGACATATTAGTAAAAT
TCTAGCAGCGTATCATCAATATTATGCCGTTAATAAAGCCGTTGACAGAGCTTTATTAGCTTCATCTGGGCAAGGTGATG
GTAAAGGCGGCGTTATTTGGCATACCCAAGGGTCTGGTAAAAGTTTAACCATGGTCTTTTTCTCTGGAAAATTAATTCAA
ATGCTGAATAACCCTACTTTAGTCGTCGTGACGGATCGTAATGATTTAGATAACCAACTGTACAGTACGTTTGTTAAATC
AAAAGGACGTTCTGGTAAAGGATTATTAAGACAAACGCCAAAACAAGCTGAAACACGTAAAGAATTAAAATCGTTATTAT
CTGTTGAGTCGGGCGGTATTATATTTACAACGATGCAAAAATTTGAACCTGAACAAAACGAAACGACCATGGCTGCTCTA
ACAGAACGTAAAAATGTGATTGTTATGGCAGATGAAGCGCATCGTACACAATATGGTTTTAATGCAAAATACGATGATAA
AGGGGAAGGCATTAAATATGGTTATGCGAAGTATTTAAGAGATGCTTTACCGAATGCGACGTTTGTAGGATTTACGGGCA
CGCCCGTAGCTTCAACGGATAAAAATACGCAAATGGTCTTTGGGAACTATATCGATGTTTATGATATGACACAAGCCGTA
GCTGATGGAAGTACAGTTAAAATTTACTATGAAAGTCGCGTAATTCCATTAAATTTACCTCAAAATTTAGACTTAGACGA
AGCATATAATGACATTACAGAAGATCAAGAAGAGGATGTAAAACAGCGTTTAAAATCAAAATGGTCACGAATTGAAGTCT
TAGCAGGCGCAAAACCTCGTGTAGAAGCCTTAGCCAAAGACATCATCCAACACTTTGAAACACGTCAGCAAGCCATGAAA
GGTAAAGGAATGATCGTAACGATGAGTCGTCGAATTGCTGTTGATTTATACGATGAAATCATTCGTCTAAAACCGGAATG
GCATTCGGATGATGATGATAAAGGTGTTATTAAAGTGGTAATGACAGGCTCATCTAGTGATCCTACTTCTTTCCAAAGAC
ATATTGGTCCTAAAAAACGTCGTAATGTATTAGAAAAACGTATGAAAGATGTGAATGATGAATTACAACTCGTGATTGTT
CGAGATATGTGGCTGACAGGGTTTGATGTTCCTTCTATGCATACGATGTATATTGATAAACCGATGAAAGGTCATAATTT
AATGCAAGCGATTGCTCGTGTCAATCGAGTTTTTAAAGATAAACCAGGCGGATTAATTGTCGACTATGTAGGTATCGCCG
AAAGTTTAAAAGAAGCACTTAAAGAATATACAGAATCTGATCAAGCTCAAACGGCAATAGATACAGATAAAGCGGTTGAA
TTGATGTTATTGAAGTATGATGTGATTCAAGATATGTTATATAATCTTGATTATTCTAAATTTAATTCAGAAAAAAAATC
TGAACGTTATTATACTATTTCAGATACGATGGATTATGTGATTGGTTTAGGTGAAGATGAACGTCAACGTTTTATTAAAA
CAGTCACAGAATTAGGAAAAGCTTTTGCTCTGTGTGCGACTGAACCAACAGCTCAAGAACTCAATGATGAAATTGCTTTC
TTTAAAGCGGTTAAAGCAGGGCTTGTTAAATTGTTACAACCATCAAAAGAAGGAAAAACACGTAAAACTCCGGCTGAAGT
TGAAGCAGAGATTAATCAACTTGTGTCACAATCTGTTGTGACAGAAGATGTGATTGATGTTTATCAAACGCTAGGTCTTG
AACAACCCGACTTATCAATCCTATCTGATGACTTTTTAAAAGATGTCGAAGGATTGAAACAGAAAAACGTGGCGGTAGAA
TTATTAAATCGATTACTCAAAGGACAAGTCAAATCACTAATGAAAACGAATGCGACGGTATCTAAACGTTTCTCTGAAAT
GTTAGGAAATTCGATTAATAAATATAATAGCCGTTCCATTGAAACATCAAAAGTGATTGAAGAACTCATTCAACTTGCCA
AAGATATTAAACAAGAACAACAACGAGGAAATGAATTAGGCCTAAATTCGGATGAGATTGCGTTTTACGATGCTTTAGTT
TCACATGAAACAGCGAAAAAAGCGATGGAAGACAAAGAACTGCGTGCGATTGCTCATGAGCTAACTAAAACAGTGAAAGA
AAACATGAGCGTTGATTGGTCTAAACGTGATAGTGCCAAAGCTAAAATGCGCGTAGCTGTTAGACGATTGCTTAAGAAAT
ATGGTTATCCCCCTGATTTACAAAAGATGGCTGTCGAACAAGTTGTCGAGCAAGCAGAACTTATGGCGAGTAATCAATAA
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| Protein sequence : | |
MNFQFNEDDLEQVALEWLESLGYDYKKGNEISMTGLAPERKSDKEVVLHERLEKALRKINSDIHPRFIEKAMHELILEKS
PNLLENNLTFHENLINGVEIEDYDEKGQSIVEIVKIVDFEHPQNNDFLAINQLTVVNGDYTKRPDIVLFINGLPIVVIEL
KNSTNETVGVEDGYHQLETYKMRIPQLFTFNEVLITSDGINTKAGSLTANYDRFMTWRSNDGETESSSSLASLDVLIHGM
LNPETLLDLIRYFVLFQDDGKGHISKILAAYHQYYAVNKAVDRALLASSGQGDGKGGVIWHTQGSGKSLTMVFFSGKLIQ
MLNNPTLVVVTDRNDLDNQLYSTFVKSKGRSGKGLLRQTPKQAETRKELKSLLSVESGGIIFTTMQKFEPEQNETTMAAL
TERKNVIVMADEAHRTQYGFNAKYDDKGEGIKYGYAKYLRDALPNATFVGFTGTPVASTDKNTQMVFGNYIDVYDMTQAV
ADGSTVKIYYESRVIPLNLPQNLDLDEAYNDITEDQEEDVKQRLKSKWSRIEVLAGAKPRVEALAKDIIQHFETRQQAMK
GKGMIVTMSRRIAVDLYDEIIRLKPEWHSDDDDKGVIKVVMTGSSSDPTSFQRHIGPKKRRNVLEKRMKDVNDELQLVIV
RDMWLTGFDVPSMHTMYIDKPMKGHNLMQAIARVNRVFKDKPGGLIVDYVGIAESLKEALKEYTESDQAQTAIDTDKAVE
LMLLKYDVIQDMLYNLDYSKFNSEKKSERYYTISDTMDYVIGLGEDERQRFIKTVTELGKAFALCATEPTAQELNDEIAF
FKAVKAGLVKLLQPSKEGKTRKTPAEVEAEINQLVSQSVVTEDVIDVYQTLGLEQPDLSILSDDFLKDVEGLKQKNVAVE
LLNRLLKGQVKSLMKTNATVSKRFSEMLGNSINKYNSRSIETSKVIEELIQLAKDIKQEQQRGNELGLNSDEIAFYDALV
SHETAKKAMEDKELRAIAHELTKTVKENMSVDWSKRDSAKAKMRVAVRRLLKKYGYPPDLQKMAVEQVVEQAELMASNQ
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