Name : HP0540
Accession : BAD13846.1
PAI name : cag PAI
PAI accession : AB120418
Strain : Helicobacter pylori 2017
Virulence or Resistance: Virulence
Product : cag pathogenicity island protein
Function : -
Note : similar to H.pylori 26695 gene HP0540:cag19, J99 gene JHP0488, NCTC11638 gene cag-I
Homologs in the searched genomes : 45 hits ( 45 protein-level )
Publication :
-Azuma,T., Yamakawa,A. and Yamazaki,S., "Direct Submission", Submitted (12-SEP-2003) Takeshi Azuma, University of Fukui Faculty of Medical Sciences, General Medicine Second Department of Internal Medicine; Shimoaizuki 23-3, Matsuoka-cho, Yoshida-gun, Fukui 910-1193, Japan (E-mail:azuma@fmsrsa.fukui-med.ac.jp, Tel:8.
-Azuma,T., Yamakawa,A., Yamazaki,S., Ohtani,M., Ito,Y., Muramatsu,A., Suto,H., Yamazaki,Y., Keida,Y., Higashi,H. and Hatakeyama,M., "Distinct diversity of the cag pathogenicity island among Helicobacter pylori strains in Japan", J. Clin. Microbiol. 42 (6), 2508-2517 (2004) PUBMED 15184428.
| DNA sequence : | |
GTGAAATGTTTTTTAAGCATATTTTCTTTCTTAACTTTTTGTGGTTTGTTTCTGAATGGTGCAGGGGCAGTAATAACGCT
TGAATCTGCCTTAAAAGCCATTCAGGCGGATGCACAAGCCAAACAAAAAACCGCTCAAGCCGAATTAAAAGCCATAGAGG
CTCAATCTAGTGCCAAAGAAAAAGCCATTCAAGCGCAAATAGAGGGACAATTGAGAACTCAGCTTGCAACTATAAGCGCT
ATGTTAAAAGGGGCTAATGGCGTTATTAATGGTGTCAATAGCATGACAGGGGGGTTTTTTGCAGGTTCAGACATCTTGCT
TGGCATCATGGAAGGGTATTCAAGCGCGCTTAGCGCATTGGGAGGGAATGTCAACATGATCGTGGAAAAACAAAAAATTA
ATACCCAAACAGAAATCCAAAACATGCAAATCGCGCTCCAAAAAAATAACGAAATAATCAAGCTCAAAATGAACCAGCAA
AACGCTCTCTTAGAAGCGTTAAAAAACAGCTTTGAACCGAGCGTTACCCTAAAAACACAAATGGAAATGCTTTCTCAAGC
TCTAGGAAGTTCTTCTGACAACGCTAAATACATCGCTTACAATACGATTGGTATCAAGGCGTTTGAAGAAACCTTAAAAG
GTTTTGAAACATGGTTGAAAGTGGCTATGCAAAAAGCAACCCTTATTGACTACAATTCCCTAACAGGTCAGGATTTGTTT
CAAAGCACCATCTACGCGCCTGCTCTTAGTTTTTTTTCAAGCATGGGTGCACCATTTGGAATCGTTGAAACATTTACTCT
AGCACCCACAAAATGCCCCTATCTTGATGGGCTAAAAATTTCAGCATGCCTTATGGAACAGGTTATTCAGAATTACAGAA
AGATTGTAGCCCTTATTCAAAATAAACTAAATGATGCAGATTTTCAAAATATCGCTTATTTGAATGGGATCAATGAAGAA
ATCAAAACCTTAAAAGGATCAGTAGATTTGAATGCACTCATAGAAGTTGCTATCTTAAACGCAGAAAATCATTTAAACTA
TATAGAGAATCTTGAAAAAAAAGCCGACCTTTGGGAAGAACAACTGAAATTAGAGAGAGAAACGACAGCAAGAAACATTG
CTAGCTCTAAAGTTATTGTCAAATGA
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| Protein sequence : | |
MKCFLSIFSFLTFCGLFLNGAGAVITLESALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGQLRTQLATISA
MLKGANGVINGVNSMTGGFFAGSDILLGIMEGYSSALSALGGNVNMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQ
NALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAKYIAYNTIGIKAFEETLKGFETWLKVAMQKATLIDYNSLTGQDLF
QSTIYAPALSFFSSMGAPFGIVETFTLAPTKCPYLDGLKISACLMEQVIQNYRKIVALIQNKLNDADFQNIAYLNGINEE
IKTLKGSVDLNALIEVAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIASSKVIVK
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