PAI Gene Information


Name : orf4b
Accession : AEQ20910.1
PAI name : Tn6166
PAI accession : JN247441_R1
Strain : Acinetobacter baumannii 1656-2
Virulence or Resistance: Not determined
Product : unknown
Function : -
Note : -
Homologs in the searched genomes :   24 hits    ( 24 protein-level )  
Publication :
    -Hamidian,M. and Hall,R.M., "ISAba1 targets a specific position upstream of the intrinsic ampC gene of Acinetobacter baumannii leading to cephalosporin resistance", Unpublished.

    -Kenyon,J.J. and Hall,R.M., "Variation in the Complex Carbohydrate Biosynthesis Loci of Acinetobacter baumannii Genomes", PLoS ONE 8 (4), E62160 (2013) PUBMED 23614028 REMARK Publication Status: Online-Only.

    -Kenyon,J.J., Nigro,S.J., Holt,K.E., Pickard,D., Dougan,G. and Hall,R.M., "Direct Submission", Submitted (18-APR-2013) School of Molecular Bioscience, The University of Sydney, Building G08, Sydney, NSW 2006, Australia.

    -Nigro,S.J. and Hall,R.M., "Antibiotic resistance islands in A320 (RUH134), the reference strain for Acinetobacter baumannii global clone 2", J. Antimicrob. Chemother. 67 (2), 335-338 (2012) PUBMED 22020138.

    -Nigro,S.J. and Hall,R.M., "Direct Submission", Submitted (12-JUL-2011) School of Molecular Bioscience, The University of Sydney, Building G08, Sydney, NSW 2006, Australia.

    -Nigro,S.J., Kenyon,J.J., Hamidian,M., Holt,K.E., Pickard,D., Dougan,G. and Hall,R.M., "Direct Submission", Submitted (16-MAY-2013) School of Molecular Bioscience, The University of Sydney, Building G08, Sydney, NSW 2006, Australia REMARK Sequence update by submitter.


DNA sequence :
ATGCCTGTTAATAATGATAAAATAACGACTATTGATTGTTTCCCAAATGATAATATTAGTCGAGTGGTTTATCGATATGG
TGGACTCGTTCGAAACGAAGATAACGACTCAACTAATCCTTTTGTTGAAGTGTTATTAATTGAGATTAGAAAAAGTGATC
AATGGTTATTTTTAGATAAGTGCTCAACATTCCTTGTTCCCGTACTTGATCTTGATGCTGTTCAACATGGCAGTATTTGG
GACGGGAATGTTCTGACCAATTACACTTATAGATTTTCAGGAAAACTCATCACAAAACGATTTTCTTTCGACTTCAGCAA
TAATAAACCGAGGAACATAAAACTTTCAGACAAAATTCCGGATACGTCAGAGTACTACATTCCATTAAAAAACTATTTTC
TTCCCAATAAAGTTGATTATGTTCTACAAGGCTATCCATTCACTAAATACACCAATGATTCATATCGGAAAGTGAATCAC
TGCTTAATGCATTCTAATGATGGAACTCAAGTCATCACTTCCTCAATCCATATTTTGCATAGCTTATTCGTCAATCGGAA
GGATATTCGGGGACTCTTATTAAGCACTTCAGGCCAATCTATCATTAACCGCTTTTTAGAATCTTATACAACAGAAGTTG
AGAATGATAATATTGAATATAAAATAAAAATCAGAAAGCCATATGAAGATATTGGCGAAACAGCAATTATATTTCTGGCT
AATCTAGCCTTAAATCCATATGTGCAGACGATAGTCGATAAAATTCAACGAAGTATGGAAGTTACTGAGTTTCATCATCT
TCAGCATGGCACAGGCATAAGATACCCCATTGTATATCCGCCACATCCTACAAAGCTTTTTCTTGAAGCAGAAGGAATTT
GGCTAGATGACAATAAGACACGTTTTTTTATTACTAGAGTGAAAAAATTTGATCCTATTAACGATCACATGATTGATGTC
AATAAAGACCTTACCAATACTGTTTCAAAAACTGATGAAAAAAACCCTCGTCCTCGTGAAAAAAGTCAAAATAAAAATGA
GCATATCAATACACAAAAACCACCATCAAGAACAAGCGGTGAATACCGTAAGCGTTCTGATGTGGAAACTGGAAATACAC
AAAATATTTTGAAGTATTCTTTTAATGAACCAGCCAATGACCCAATTGAAGTTGGCACATCCAATCATCCATATTCAGAT
AAATCAGAGGATGTTGAAACATCATCTGATGAACCATATGGCAATAAAAATACTAAAACTAAAAAGTCTGAAACAACTGA
TAATCCGCCTAGCAGAGATGAACGCTTTGATATTCAATATATTATTCAATCACTTAACCATTTAACACTAGATACAACCT
CTCCATTAGAACGTGTGTATTCAATTGATATATTGGGGAATGAGATACACGGATTCAACTTACTTCAAATAAAGAAACTC
GTTCCTCAACCAAAGCATCCATCTTGGATTGATGCAGAATTTGGAAGGAAATTGTTATTTTTAAAACTGGAATTGAAAGA
TCAGCATGATCAATATTATTTAATTGATATACATAAAAATAAAAGCCATGAAGCATTCTGTGCTTTTATTATCGTGTCAC
CACATAAGTTAACCCGTGAGCAAATAAAAAATATATGTATAGAGCTTGAGAATGCAAAAGGAATTAAAAAATGGACGCTA
CGTTGTGAAAGTTTTACCAAAAAAATTATTTCGATTAAACATTCATCTGCTACTCCCGATGAGTGGAAAAATAGATTTAA
AAATTTATTTTCAACATTAATTAATTGA

Protein sequence :
MPVNNDKITTIDCFPNDNISRVVYRYGGLVRNEDNDSTNPFVEVLLIEIRKSDQWLFLDKCSTFLVPVLDLDAVQHGSIW
DGNVLTNYTYRFSGKLITKRFSFDFSNNKPRNIKLSDKIPDTSEYYIPLKNYFLPNKVDYVLQGYPFTKYTNDSYRKVNH
CLMHSNDGTQVITSSIHILHSLFVNRKDIRGLLLSTSGQSIINRFLESYTTEVENDNIEYKIKIRKPYEDIGETAIIFLA
NLALNPYVQTIVDKIQRSMEVTEFHHLQHGTGIRYPIVYPPHPTKLFLEAEGIWLDDNKTRFFITRVKKFDPINDHMIDV
NKDLTNTVSKTDEKNPRPREKSQNKNEHINTQKPPSRTSGEYRKRSDVETGNTQNILKYSFNEPANDPIEVGTSNHPYSD
KSEDVETSSDEPYGNKNTKTKKSETTDNPPSRDERFDIQYIIQSLNHLTLDTTSPLERVYSIDILGNEIHGFNLLQIKKL
VPQPKHPSWIDAEFGRKLLFLKLELKDQHDQYYLIDIHKNKSHEAFCAFIIVSPHKLTREQIKNICIELENAKGIKKWTL
RCESFTKKIISIKHSSATPDEWKNRFKNLFSTLIN