Name : VPI2_0006c (VPI2_0006c)
Accession : ACA01823.1
PAI name : VPI-2
PAI accession : EU272902
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Not determined
Product : hypothetical protein
Function : -
Note : similar to AA sequence (same species):RefSeq:ZP_01675629.1, AA sequence similar to TIGR locus VC1761, VC1760 in Vibrio cholerae strain N16961, fusion of orthologues VC1761 and VC1760, insertion of ISVcAm21 into orthologue of VC1760, incomplete VC1760, par
Homologs in the searched genomes : 17 hits ( 16 protein-level, 1 DNA-level )
Publication :
-Coelho,A., "Direct Submission", Submitted (09-NOV-2007) Genetica, Universidade Federal do Rio de Janeiro, Rua Prof. Rodolpho Rocco, CCS, Bl. A-Ilha do Fundao, Rio de Janeiro, RJ 21949-0, Brazil REMARK Sequence update by submitter.
-Figueiredo,S.C., Neves-Borges,A.C. and Coelho,A., "The neuraminidase gene is present in the non-toxigenic Vibrio cholerae Amazonia strain: a different allele in comparison to the pandemic strains", Mem. Inst. Oswaldo Cruz 100 (6), 563-569 (2005) PUBMED 16302067.
-Figueiredo,S.C.A. and Coelho,A., "Direct Submission", Submitted (14-NOV-2004) Genetica, Universidade Federal do Rio de Janeiro, Rua Prof. Rodolpho Rocco, CCS, Bl. A-Ilha do Fundao, Rio de Janeiro, RJ 21949-0, Brazil.
-Figueiredo,S.C.A. and Coelho,A., "Direct Submission", Submitted (03-MAR-2005) Genetica, Universidade Federal do Rio de Janeiro, Rua Prof. Rodolpho Rocco, CCS, Bl. A-Ilha do Fundao, Rio de Janeiro, RJ 21949-0, Brazil REMARK Sequence update by submitter.
-Figueiredo,S.C.A., Reis,R.C., Goncalves,M.S.M., Beltrao,P.J.M.S.I. and Coelho,A., "The VPI-2 pathogenicity island of Vibrio cholerae Amazonia", Unpublished.
| DNA sequence : | |
GTGGAGTTAACCTCTTTAATCAGCAAGTTCTTCTCTAGCTCAGATAAAACGTCTCAGTTTGAACTCATTTGTGATGATAG
TCTTGATTTTGCAACTTCCAGAAAAACTCTAGAGAAAATTAAAGCTGGTAAAGCTGATGAGTGGATAACAGCGCAGTATG
TTGCACTTAAAATGCTTGAAGAGCAGGGGGATGTAAGCTCATTTCCAGATGGCTTCATTATGCCTGCCGATACAGCTGTC
AGACTCGATTCTGAGTTGAGGGATTTGTTTAGTTTGCCCCCGGTTTGGAAAGGAGTCATTGACGCTGATATTCAAGGAAA
AGCTAGTACCCCCACCTTTAAAATTGATCTTTCGGTCACAACCAAGCAAGGTCGAACAACACTAAATTACACTGTGGATG
GGCCTTTCATTCGGTTTAGTCAAAATGAGCAGTACCTGCTAACACCCGAGCAGCTTATGGTCTTTGTTGCGCATAAAACC
CATGTAAAGTCTGATAGGTCTGAATATGATAACTTACTGTACTTACACTCTTTGCAAGAGGCCCAAAAGAATGGTTGTAA
GCTGAATCTAAAGCACTTTGAAAGGCTAAGGATATTGACACCAAATAAAATCACAGTAGAAGCAGAATTGAATTCTCAAG
GCGAGCTAATATTGACGCCAAACATGGGGCAAAGTGCGAGTCATGAGTCGATTCAAAAGGTTTTGGGGCAGTTGCAAAGC
GACAACGCAATTACTCTGAAAGTGGGTGATGAAATAGTCTTATTTTCTGAAGAAAAGCTAATGGCTGTAAAAGAAGTTAT
TAGCAACAGGGTAATTCCCCAACAGCAAGTTAAAGCGTTCCTGGAAAACCCTACAGCATATATTGATGCGAGTTTAGTCG
ATCTTGATTTAGGTTTTTCTATCAGAGTTCATGGTGCGACAGTTTTTAAACATGCTTATTTTGGAGAAACGGACGAGTCA
GGTATAGATTGGTTCGGAGCCTCCCCCACATCTGATTTGATTAATCCAATATCCAAGCTGACTGATAGAGTTCGCGATAA
AACAACTCTTGAGGACGTAGCTAAGAAGATTGAAGATGCACGACAAACCGGAGCAACCGTTTTTGATTATGAAGGACAAT
CATACGATATCAGCGATCCTGCAGCTGTTGAAAAAGTTCTAAACGAAATAGGTCACAAGATATCTAGCCCTAATACAGAT
CTTTCTAGCTACGGAGAGGCAGAAGACGCCGAGACTGAATCAGAAGGCTCAGAAATACATGTTGTTGATATTGATCTAAA
TGACGAAGAGCTGTCTGAAAATTCTCCTAAAGTTGAACAACTGATTTCTGATATTTCATGGGATGGTGAGTTAAATTGGG
AAAACCACAAGCGGACACCATTCCCACACCAGGATATTGGTGTTCGTTGGATTTTAGGCGTTGAACAAAAAAGCTTATCA
GACTCGAAAGTTAGTGGAGCCTTGCTAGCTGATGACATGGGGTTAGGTAAGACTTTTATGGCCCTCTCAGCAATAGAACA
TATTTATCAACGACAACAAATTAGTGGTGAAACGAAGAAACCTGCGTTGATAGTTGCTCCTTTGAGTTTATTGGAAAACT
GGAAGGATGAGGTAGATAAAACCTTTAAACACTCACCATTCAAAGATGTAGTTATTTTGCAATCATCCGCTGAGTTAAAT
GAGTATCGCATGGGGGGCGTAGAGATTCGAGGCCAGAGCGCATCTGATGATTGTTTAGAACCCAAATATTCTTTGAAAGT
TGGGAAATACTTTGGTCCTAGCCGTTTAGATCTACCAGAGCGATTGGTAATCACTACTTATCAAACTTTGCGCGATTACC
AGTTCTCCATGTGTTTGATTGATTGGGGGATCGTGGTTTTCGATGAAGCCCAGAACATTAAAAATCCAAATGCACTTCAA
ACTCGTGCTGCGAAAGGCCTAAAAGCGGATTTCAAACTAGTGGCTACGGGTACGCCTGTAGAAAACAGCTTAGCCGATTT
TTGGTGTTTAATGGATACAGCTTGCCCAGGACATCTGGGTAGCTATCAAGAATTTCGTGCTCGTTATATCTCACCAATTC
TTAAAGCTGCTGGTGATGAAGTTGAAGAAATAAGAGCTAGGCTTGGAAGAGAACTTCGTATAGCTGTCGGGGCATTGATG
CTTAGGCGCATTAAAGAGGACAACCTTAAAGGGTTACCTCTAAAACATATGTATGCTGGTGGAGAATTTGAAAACTGGAA
GTATTTAGAAGAACTTAAGTCGACAATGGTTGGCTACCAGAGAGATGTTTACGAAGGAGCGATTAGCCATCAACTCGAGA
ATGAAGAAAGTCACGCGCTTACCACTTTGATGCGGCTAAGAGATAGTTCGTTACATCCTCGGTTAAGTGATGGAGGTCGC
CTTGATATTCCCAAAAATGCAAAATCAGCTAGAGCTCTATACGGAAAATCAGGAAAATTAGTTTCCTTGCTTGAGACTTT
AGACAGAGTACGAAGCAAACAAGAAAAGTGCATTATTTTTGCGGTTAACAAACGACTGCAAAGTTTCTTAAGTGTGACTT
TGGGGCAGATCTATAACCTAGGTCCGCTCTCAGTGATTAATGGTGATGCAAAAGCTGTAGCAAAGCGTAAATCTGTCCCA
ACTCGAAAATCAATGATTTCAGACTTCGAAGCAAAAGAAGGCTTTAATCTAATTGTAATGTCTCCAGTCGCGGCTGGTGT
CGGTTTAACTGTGGTCGGTGCGAATCATGTGGTTCATTTAGAGCGGTACTGGAACCCAGCTAAAGAAGCTCAAGCTACGG
ATAGGGTTTATCGTATCGGACAGGAAAAAGAGGTTCATATCTACATCCCTCTGTTGCATCACCCTGAATTTGAATCATTT
GATGTAAACCTACATAGGCTACTTACCCAAAAAACGTTGCTGAAGGATGCTGTTGTTACACCAGAAGATGTTATTCCACA
GCCAGCAGGTGTCGGGGGAGTAGTTTCTGGTGATTTGATTGATAAACGTATTACAGCGGCTGCATATTTCGGAGCATTCC
GATCAGTCATTTCGGTATTATCCGATCACCCATTTCGGTTTAAACCGATCACTGATTCCGCGATTATCCGATCACTTTTA
GCCTAA
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| Protein sequence : | |
MELTSLISKFFSSSDKTSQFELICDDSLDFATSRKTLEKIKAGKADEWITAQYVALKMLEEQGDVSSFPDGFIMPADTAV
RLDSELRDLFSLPPVWKGVIDADIQGKASTPTFKIDLSVTTKQGRTTLNYTVDGPFIRFSQNEQYLLTPEQLMVFVAHKT
HVKSDRSEYDNLLYLHSLQEAQKNGCKLNLKHFERLRILTPNKITVEAELNSQGELILTPNMGQSASHESIQKVLGQLQS
DNAITLKVGDEIVLFSEEKLMAVKEVISNRVIPQQQVKAFLENPTAYIDASLVDLDLGFSIRVHGATVFKHAYFGETDES
GIDWFGASPTSDLINPISKLTDRVRDKTTLEDVAKKIEDARQTGATVFDYEGQSYDISDPAAVEKVLNEIGHKISSPNTD
LSSYGEAEDAETESEGSEIHVVDIDLNDEELSENSPKVEQLISDISWDGELNWENHKRTPFPHQDIGVRWILGVEQKSLS
DSKVSGALLADDMGLGKTFMALSAIEHIYQRQQISGETKKPALIVAPLSLLENWKDEVDKTFKHSPFKDVVILQSSAELN
EYRMGGVEIRGQSASDDCLEPKYSLKVGKYFGPSRLDLPERLVITTYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQ
TRAAKGLKADFKLVATGTPVENSLADFWCLMDTACPGHLGSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALM
LRRIKEDNLKGLPLKHMYAGGEFENWKYLEELKSTMVGYQRDVYEGAISHQLENEESHALTTLMRLRDSSLHPRLSDGGR
LDIPKNAKSARALYGKSGKLVSLLETLDRVRSKQEKCIIFAVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVP
TRKSMISDFEAKEGFNLIVMSPVAAGVGLTVVGANHVVHLERYWNPAKEAQATDRVYRIGQEKEVHIYIPLLHHPEFESF
DVNLHRLLTQKTLLKDAVVTPEDVIPQPAGVGGVVSGDLIDKRITAAAYFGAFRSVISVLSDHPFRFKPITDSAIIRSLL
A
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