PAI Gene Information


Name : hrcN
Accession : AAT96195.1
PAI name :
PAI accession : AY597278
Strain :
Virulence or Resistance: Virulence
Product : HrcN
Function : -
Note : PAI-R1-ORF49
Homologs in the searched genomes :   1534 hits    ( 1534 protein-level )  
Publication :
    -Araki,H., Tian,D., Goss,E.M., Jakob,K., Halldorsdottir,S.S., Kreitman,M. and Bergelson,J., "Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis", Proc. Natl. Acad. Sci. U.S.A. 103 (15), 5887-5892 (2006) PUBMED 16581904.

    -Araki,H., Tian,D., Goss,E.M., Jakob,K., Kreitman,M. and Bergelson,J., "Direct Submission", Submitted (12-APR-2004) Ecology and Evolution, University of Chicago, 1101 E. 57th St., Chicago, IL 60637, USA.


DNA sequence :
GTGGTGAACGCGGCACTGGACCAGTGGAAAGCGGTTCAGGCGGCACGCCTTTCACAGTACAGCGCCGTGCGTGTCAGCGG
TCGGGTAAGTGCGGTGCGGGGTATTTTGCTGGAGTGCAAATTGCCTGCCGCCAAAGTCGGCGACTTGTGTGAAGTGAGCA
AGGCCGACGGCAGCCTGTTATTGGCCGAGATCGTGGGTTTCACGCCCGATTGCACGCTGCTCAGTGCGTTGGGGGCGCCC
GACGGGATTCAGGTCGGGGCGACGATTCGCCCGCTGGGCATTGCCCACCGCATTGGGGTCGACGACAGTCTGTTGGGCTG
TGTACTGGATGGTTTTGGTCGACCTTTGCTCGGCGATGCCCTAGGCGCTTTCGCAGGTCCCGACGATCGCCGCACGACCT
TGCCCGTCATTGCCGATGCCCTGCCGCCTACCCAACGCCCGCGTATCAGCAGAGCCTTGCCCACCGGAGTACGAGCGATC
GACAGCGCCATCCTGCTGGGCGAAGGCCAACGTGTCGGCCTGTTCGCCGGTGCCGGTTGTGGCAAGACCACGCTTATGGC
CGAACTGGCCCGCAACATGGATTGCGACGTGATTGTCTTCGGTCTGATCGGTGAACGGGGACGCGAGCTGCGCGAGTTTC
TCGATCATGAGCTGGATGAAACCCTGCGCAGCCGCTCGGTCCTGGTCTGCGCCACGTCGGACCGATCGAGCATGGAGCGT
GCACGTGCCGCGTTCACGGCAACCGCCATCGCTGAAGCGTTCCGTGAAAAGGGCCAGAAAGTGCTGCTATTGCTCGATTC
CCTCACGCGATTTGCCCGTGCACAGCGTGAAATCGGCATTGCCTCGGGTGAGCCTCTGGGGCGCGGCGGCCTACCGCCTT
CGGTGTACACCTTGCTGCCACGTCTGGTTGAGCGCGCGGGCATGAGCGAGAACGGCTCGATCACTGCGCTTTACACCGTA
CTGATCGAACAGGATTCGATGAATGACCCGGTGGCGGACGAGGTGCGTTCGCTGCTGGATGGCCATATTGTGCTGTCGCG
AAAACTGGCCGAGCGTGGTCATTACCCGGCCATCGACGTCTCCGCCAGCATCAGCCGAATCCTCAGCAACGTGACCGGTC
GCGAACATCAGCGCGCCAACAATCGACTGCGCCAACTGATGGCGGCCTACAAACAGGTGGAAATGCTGCTGCGTCTGGGC
GAGTACCAGGCAGGTTCAGATCCCGTCACCGACTGTGCCGTGAAGCTGAACGAGGACATCAATGCCTTCCTGCGCCAGGA
TCTGCGTGAACCGGTGCCGCTGGAGGAAACGCTGAATGCGTTGCTCAGGATCACTTCACAGTTGCCGGAGTAA

Protein sequence :
MVNAALDQWKAVQAARLSQYSAVRVSGRVSAVRGILLECKLPAAKVGDLCEVSKADGSLLLAEIVGFTPDCTLLSALGAP
DGIQVGATIRPLGIAHRIGVDDSLLGCVLDGFGRPLLGDALGAFAGPDDRRTTLPVIADALPPTQRPRISRALPTGVRAI
DSAILLGEGQRVGLFAGAGCGKTTLMAELARNMDCDVIVFGLIGERGRELREFLDHELDETLRSRSVLVCATSDRSSMER
ARAAFTATAIAEAFREKGQKVLLLLDSLTRFARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSENGSITALYTV
LIEQDSMNDPVADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRILSNVTGREHQRANNRLRQLMAAYKQVEMLLRLG
EYQAGSDPVTDCAVKLNEDINAFLRQDLREPVPLEETLNALLRITSQLPE