Name : tnpB
Accession : AAR03857.1
PAI name : cag PAI
PAI accession : AY330636
Strain : Helicobacter pylori 2017
Virulence or Resistance: Not determined
Product : transposase B-like protein
Function : -
Note : -
Homologs in the searched genomes : 39 hits ( 37 protein-level, 2 DNA-level )
Publication :
-Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates", Gene 328, 85-93 (2004) PUBMED 15019987.
-Blomstergren,A., Lundin,A., Nilsson,C., Engstrand,L. and Lundeberg,J., "Direct Submission", Submitted (26-JUN-2003) Biotechnology, Royal Institute of Technology, Alba Nova University Centre, Roslagstullsbacken 21, S-106 91 Stockholm, Sweden.
| DNA sequence : | |
ATGAAAGTCAATAAGGGTTTTAAATTCCGCTTGTATCCCACTAAAGAACAACAAGATAAGTTGCAACACTGCTTTTTTGT
CTATAATCAAGCTTATAATATTGGCTTGAATTTACTGCAAGAGCAATATGAAACCAACAAAGATTTACCTCCCAAAGAAA
GAAAGTGGAAAAAATCAAGCGAGTTAGATCATGCGATTAAACACCACTTGAACGCTAGGGGGTTAAGCTTTAGTAGTGTG
ATAGCCCAACAAGCACGCATGAATGTTGAAAGGGCTTTAAAAGATGCTTTTAAAGTTAAAAACAGGGGCTTTCCTAAATT
CAAAAACTCTAAATTCGCCAAACAATCTTTTTTGTGGAACAATCAAGGCTTCTCTATCAAAGAGAGCGATGAGGAGCGCT
TTAAGATATTCACTTTAATGAAAATGCCCTTAATGATGCGCATGCATAGAAACTTCCCCCCTAATTCTAAAGTCAAGCAA
ATTGTGATCTCTTGCAGCCATAGAAAGTATTTTGTTAGCTTTAGCGTGGAATACGAACAAGACATTACTCCCATCAAAAA
CCCTAAAGATTGTGTGGGGCTAGATTTGAATACCCTTGATATAGCTTGTTCTTGTGAGATAAACAACCATGAAAAACTAA
CGGACTTTAAGCAATACCAAACAGACATGAAAGAATTACTAGGGATAGAAATAGATGAAGAGCTGGATACTAAACGACTT
ATCCCTACTTATTCCAAATTGTATTCTTTAAAAAAATACTCTGAAAAATTTAAAAGATTACAAAGAAAACAAAGCCGTAG
GGTGTTAAAGTCTAAACAAAACAAAACCAAATTAGGAGGTAATTTTTACAAAACGCAAAAGAAATTAAACCAAGCCTTTG
ACAAGTCTAGTCATCAAAAAACAGACAGATACCATAAAATCACAAGCGAACTTTCAAAGCAATTTGAATTGATAGTAGTT
GAAGATTTGCAAGTAAAAAACATGACTAAAAGAGCTAAACTCAAAAATGTTAAACAAAAGAGTGGGCTTAATCAATCTAT
CTTAAACGCTTCATTCTATCAAATCATCTCTTTTTTAGACTACAAACAACAGCATAATGGCAAATTGTTAGTGAAAGTTC
CCCCACAATATACGAGTAAGACTTGCCATTGTTGTGGGAATATCAACCACAAGCTTAAATTAAATCATAGGCAGTATTGG
TGTTTAGAATGCGGGTATAGAGAACACAGAGACATCAACGCTGCGAACAATATTTTAAGCAAAGGGTTAAGTCTTTTTGG
GGTAGGAAATATCCATGCAGACTTTAAAGAACAAAGCCTTTCGTGTTAG
|
| Protein sequence : | |
MKVNKGFKFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYETNKDLPPKERKWKKSSELDHAIKHHLNARGLSFSSV
IAQQARMNVERALKDAFKVKNRGFPKFKNSKFAKQSFLWNNQGFSIKESDEERFKIFTLMKMPLMMRMHRNFPPNSKVKQ
IVISCSHRKYFVSFSVEYEQDITPIKNPKDCVGLDLNTLDIACSCEINNHEKLTDFKQYQTDMKELLGIEIDEELDTKRL
IPTYSKLYSLKKYSEKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQAFDKSSHQKTDRYHKITSELSKQFELIVV
EDLQVKNMTKRAKLKNVKQKSGLNQSILNASFYQIISFLDYKQQHNGKLLVKVPPQYTSKTCHCCGNINHKLKLNHRQYW
CLECGYREHRDINAANNILSKGLSLFGVGNIHADFKEQSLSC
|
|
