Name : S15
Accession : AAQ19138.1
PAI name : PAI I CL3
PAI accession : AY275838
Strain : Escherichia coli 042
Virulence or Resistance: Not determined
Product : putative UvrD/REP helicase-like protein
Function : -
Note : similar to Escherichia coli O157:H7 EDL933 Z1641 and Z1642 genes encoded by AE005312
Homologs in the searched genomes : 25 hits ( 23 protein-level, 2 DNA-level )
Publication :
-Shen,S., Mascarenhas,M., Rahn,K., Kaper,J. and Karmali,M.A., "Direct Submission", Submitted (14-APR-2003) Laboratory for Foodborne Zoonoses, Health Canada, 110 Stone Road West, Guelph, Ontario N1G 3W4, Canada.
-Shen,S., Mascarenhas,M., Rahn,K., Kaper,J.B. and Karmali,M.A., "Evidence for a hybrid genomic island in verocytotoxin-producing Escherichia coli CL3 (serotype O113:H21) containing segments of EDL933 (serotype O157:H7) O islands 122 and 48", Infect. Immun. 72 (3), 1496-1503 (2004) PUBMED 14977955 REMARK Erratum:[Infect Immun. 2004 Jul;72(7):4330. Karmal MA [corrected to Karmali MA]].
| DNA sequence : | |
ATGGTCACGATTTGTGTTGACGGTGAAAATAAGACTCATAAAATTACCGACTGGACGCTGTGGGCTGGAAATGACGACGG
AGAGGTTATGCTGACCTGTCATTTTCGCAGCGGAAAAAAATATACTCGTCCGCTTTCTGTATGTCAGATAACGCCAACTG
TAAATTTGCGAAATGTTTTCCTCGAAAGGAAAGGGGACGCTGTAACATCCCGGGCTGAACGGGTTATTATATATGGTGAT
AAATATGCTGCTGTTTATTACCGCGAGGGTGAACGACCCTACATTATGAAAACGACCGGCCTTGACTTTCAACAGTGTTC
AGCATTTACAGAGCATGCCGTGTTTAATTACTTGTGTAGGGTGGCTAATGAACGTATTTTTTATGCTCGTGGTAATAACC
GAAATATCGATGAGAATATCCTTAGGCAGATAAAGAAAATAGTTCCTCATCCGGATGCCGCCTTGCATGCATACTGTTCA
GGACAGAGTAAAAAACGTGATTCGCCATGGGGTTTGATTTTTCCGTTTGGTCTTAATGAAAGTCAGTTGCTGGCTGTCGA
ACGGGCATTTTCCTCACAGATTTCAGTTATTGAAGGACCACCTGGAACAGGTAAAACACAGACTATACTCAATATTGTTG
CTAATATATTAATTCAGAATAAAACAGTGGCAATTTTGTCCAATAATAACTCAGCTGTCAGTAATGTTTATGAAAAGATG
GACAAACAGCAACTGGGATATGTGGTGGCACGACTGGGGAGTACGGAGAACAGGCAACAGTTTTTTTCAACGTCGATTTC
GCGTTCTGAGGAAGTCTTACCTGACTCACCGTCTGCAAATGCGATTGATGATGTACTTCAACAAGTGAAAAAACACCTGA
ATGCCATTAACCAGGTCGCTTCGTTAAAAGCAGAAATTAATGAGCTGAATATTGAGTATAAATACCTGCAGCAATGGCAG
AGTCAGAATCTTCGACCGGAGGAGCTTTTTTCTCACAAATATCGATTTTCCTCACAAAAAACAACCGACCTGATGGCTTA
TATTCATTACCTTTCTGACAGGCGGATTGGATTCAGAAACAGAATTGATTTGTTGTTAAACTTCAGGATACTGAAAGTCA
AACCATTGATGATTCCGGAGAGAAGGCTGGCACTATTTACTTCTCTTCAGCTTTCTTATTATGAAAAAGCTATCCGGGAA
AAACAAATTTCTCTGAATGAATATGAGGGAGTATTAAAAAAATCTGATTTTAAAATTTTACTGGGGCGCCTGACATCATG
GTCTATGCTTTATTTAAAGCAACATCTGCGAAGAAATGTTTCAACAAGAAGTTCATTCTCGGCAGAGACATACAGGGATG
AATTTGACCATTTTATAAAGCGTTTTCCGGTTATTGGTAGCAGCACGCATTCGATTATTAACTCAATCGGTAAGGGGGCC
CTTCTTGATTATGTGATTATTGATGAAGCCTCACAGCAGGATATTGTTCCTGGCATTCTGGGACTGGGATGTGCCCGTAA
TGTAATCGTTGTAGGGGATCGTAAGCAACTTCCACATGTTCCTGTATTACTCCCGAGCAGCCCACCACCACCGGCAGAAT
ACTATAATTGTGAGAAATATAGTCTACTTGATTCGGTTTGTATGTTGTTCAGGAACATGGTGCCAGTAACCCTTCTTAAA
GAGCATTATCGTTGTCATCCTAAAATCATTCAATTTTGTAATAAGCTGTTTTATGATAATGCTCTGATACCGTTAACGGT
TGATTCCGGTGAAGCCTCATTATCTCTGGTCATCACGGCAAAAGGAAACCATACCCGTAATTTTTCAAATCTCAGGGAGC
TTGAATCTCTGGAAGGTCATTACTGGGATGAAGAAAGTAGCAGGGGATACATTGCCCCATATAATGCACAGGTTAATCTG
GCTGAAAAAGTGCTGCCTGCTGATTTTGTGAAATCGACGGTGCATAAATTTCAGGGACGGGAGTGCGATGAAATTGTGTT
TTCCACTGTGCTGGATAAGAAGCGCAGCAGCCAGCACAGTCGGAACATCGCGTTTGTTGATAATCCTGAACTGGTGAATG
TCGCTGTTTCAAGGGCCCGAAATAAATTTACGCTGGTGACTGGTAATGATGTATTTGAACGCCACGCTGGACATATTGCG
GCGCTGATTCGTTACATCAAATACTACGCTGATGACGGAGAGATTTTCGAGAGCCCGGTCATATCAGCATTTGATTTGCT
GTACAGTGAGTATGACAAATCACTGGAACGACTGAATAGTAGATTGAATTCAAATGATTCACACTTTAAGTCAGAACAGA
TTGTGGCCTGCCTGTTGCGGGATATCCTGTCGCAGGATAGTTATCGGAGTATGATGTTTCATTCACAAATAGCGCTGAAT
CAGTTGGTGTTGCTGGAGCGGGGGGATTTTACACACCGTGAACAGTTATTCATGCGTAACCGGGCCAGTTGTGACTTTGT
TGTTTACTATAAGGTCGGGAAGACTCCATTAGGGGTTATTGAAGTGGATGGAGGTTATCATCTGACCAGTGTTCAGGCTG
AACGTGATGAACTTAAAAACAGTATACTGAAGAAATGCGGCCTGCCATTGCTAAGATTACGTACTATAGACAGTGATATA
GAAGGGAAGTTGGGAGCGTTTCTGTCAGGCCTGACAGGCTAA
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| Protein sequence : | |
MVTICVDGENKTHKITDWTLWAGNDDGEVMLTCHFRSGKKYTRPLSVCQITPTVNLRNVFLERKGDAVTSRAERVIIYGD
KYAAVYYREGERPYIMKTTGLDFQQCSAFTEHAVFNYLCRVANERIFYARGNNRNIDENILRQIKKIVPHPDAALHAYCS
GQSKKRDSPWGLIFPFGLNESQLLAVERAFSSQISVIEGPPGTGKTQTILNIVANILIQNKTVAILSNNNSAVSNVYEKM
DKQQLGYVVARLGSTENRQQFFSTSISRSEEVLPDSPSANAIDDVLQQVKKHLNAINQVASLKAEINELNIEYKYLQQWQ
SQNLRPEELFSHKYRFSSQKTTDLMAYIHYLSDRRIGFRNRIDLLLNFRILKVKPLMIPERRLALFTSLQLSYYEKAIRE
KQISLNEYEGVLKKSDFKILLGRLTSWSMLYLKQHLRRNVSTRSSFSAETYRDEFDHFIKRFPVIGSSTHSIINSIGKGA
LLDYVIIDEASQQDIVPGILGLGCARNVIVVGDRKQLPHVPVLLPSSPPPPAEYYNCEKYSLLDSVCMLFRNMVPVTLLK
EHYRCHPKIIQFCNKLFYDNALIPLTVDSGEASLSLVITAKGNHTRNFSNLRELESLEGHYWDEESSRGYIAPYNAQVNL
AEKVLPADFVKSTVHKFQGRECDEIVFSTVLDKKRSSQHSRNIAFVDNPELVNVAVSRARNKFTLVTGNDVFERHAGHIA
ALIRYIKYYADDGEIFESPVISAFDLLYSEYDKSLERLNSRLNSNDSHFKSEQIVACLLRDILSQDSYRSMMFHSQIALN
QLVLLERGDFTHREQLFMRNRASCDFVVYYKVGKTPLGVIEVDGGYHLTSVQAERDELKNSILKKCGLPLLRLRTIDSDI
EGKLGAFLSGLTG
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