Name : S12
Accession : AAQ19135.1
PAI name : PAI I CL3
PAI accession : AY275838
Strain : Escherichia coli 042
Virulence or Resistance: Not determined
Product : putative UvrD/REP helicase
Function : -
Note : similar to Escherichia coli O157:H7 EDL933 Z4318 gene encoded by GenBank Accession Number AE005527 and to Salmonella enterica helicase orf1 encoded by GenBank Accession Number X99719
Homologs in the searched genomes : 31 hits ( 31 protein-level )
Publication :
-Shen,S., Mascarenhas,M., Rahn,K., Kaper,J. and Karmali,M.A., "Direct Submission", Submitted (14-APR-2003) Laboratory for Foodborne Zoonoses, Health Canada, 110 Stone Road West, Guelph, Ontario N1G 3W4, Canada.
-Shen,S., Mascarenhas,M., Rahn,K., Kaper,J.B. and Karmali,M.A., "Evidence for a hybrid genomic island in verocytotoxin-producing Escherichia coli CL3 (serotype O113:H21) containing segments of EDL933 (serotype O157:H7) O islands 122 and 48", Infect. Immun. 72 (3), 1496-1503 (2004) PUBMED 14977955 REMARK Erratum:[Infect Immun. 2004 Jul;72(7):4330. Karmal MA [corrected to Karmali MA]].
| DNA sequence : | |
ATGATTTTACTGGAGCATGAGTATGTTATGGCGAAACTGATAAATATATCAGCGTCCACTGAGGAGAGAATGACGCCTGG
GGAGAGGAGGGTGGCTTCACGACTGGAGAGCTTTCTGAATGATGACTGCCTTGTCTGGTACGATATTCCGGTGGGACGGA
AAAACCGGCATCCGGATTTTGTCATTATTGACCCGGAGAACGGACTGGTATTTCTGGAGGTCAAGGACTGGACGGTTTCC
ACGCTGCGCCAGGTAAATCAGGAGCAGGTCACGCTGGAAACCGACGGTCTTCTGAAATCAGAAATCAATCCGCTGGTACA
GGTTCGTCGTTATGCCTGTGATACGGTTAATGCCTTACCTGCAAACCCGTGCTTACGGCAGAATGACGGTCAGTATAAGG
GACGGCTGAACCTGGCCTGGGCGTATGGTGTGGTGTTTACCCGCATTACCCGTCAGCAACTGAAGACACTGGCAGGGAAT
GATGAGAATGCGGTGGAAAAAATTTTTCCTTCAGCACAGACAATCTGCCAGGATGAAATGACGCAGTCTGTTTTACCTGA
GGTATTCCAGCAAAAAATTGCCGGGATGTTTACCACGGGATTCAGAACCCGGGTGACACCCCGGATGAGAGATATTCTGC
GCGCCCATCTGTTTCCTGAAGTGACCGTGAAACAGAACTCACAAATCAAAATCATGGATATTCAGCAGGAGATTCTGGCC
AGAAATATTGGTGACGGGCATCGTGTCATTCATGGTGTGGCCGGTTCCGGAAAAACCATGATTCTTTTGTTCCGTTGCCT
TTACCTGGCTGAAACCACACCCGGAAAGATTCTGGTGTTGTGCTACAACATTACCCTGGCCAGCTATCTGCGGGAATGCA
TTGAAGCCAGAGGGTTGGCGTCACGGGTTACGGTATCCCATTTTCACAGCTGGTGTGCCTCAATGGTAAAACGCCACGGT
ATTAAGGTGACGGCCGACAGAAAAGAATATCCTGATAAATGCTTCAGTGCACTGGAAGAGGCCGTGAACAGCGGAAAAAT
CACCCGAACCGGATATGATGCTGTACTGGTGGATGAGGGGCATGATTTTGACAGTCGCTGGCTGGCCCTGATTGCCCGTC
TGTTTGATAACGCATCCCGTTCACTGCTCCTGATGTACGATGACGCCCAGTCCATTTACCGGCGGGAGCGGGCCCTGAAC
TTTTCTCTGGCCAGTGTGGGGATTCAGGCACAGGGACGCACTTCTGTCCTGCCGGTCAATTATCGTAATCCGAAACGCAT
TCTGCACTTTGCTTATGCATTCTCGCGCGAGTATTTTGAAAAACATCAGAACCGTGAAATACCGCTCGTTCAGCCACAGG
CGGGCGGTGAAGAGGGTACGGAGCCGGAAATCCTGCGTTGTGCTTCTGAACGTGATGAAGCCAGACAAGTTGCAGACTGG
CTGGAGAAGCGCCATGCCCTGTGTGGTCACTGGAGTGATATGGCTGTGCTGTGTCCGACAGAGCGTTCAGCGCAACAATT
GCAGGACGTTATGACACTACGCGGGGTGCCTTTTGCCACCTGTTTTGACAGGGAAGGCAAGAAGACATACTCGCGACGTA
AGGATGTGGTGCATTTACTGACGTACCAGAGCAGCAAGGGGCTGGAGTTCCCGTATGTGGCGGTTATCAATGCTTCTTTC
GTTCCTTCTGGTGTAGCGGATGAGTCTGAAGTAATTCCGGTGCTTTATGTGGCGTTTACCCGGGCAACCCGTGAATTACT
GGTGACCTGTTACCGTGAAAACAGTATCAGTCGTCACCTTGAGGATTTTGCATAA
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| Protein sequence : | |
MILLEHEYVMAKLINISASTEERMTPGERRVASRLESFLNDDCLVWYDIPVGRKNRHPDFVIIDPENGLVFLEVKDWTVS
TLRQVNQEQVTLETDGLLKSEINPLVQVRRYACDTVNALPANPCLRQNDGQYKGRLNLAWAYGVVFTRITRQQLKTLAGN
DENAVEKIFPSAQTICQDEMTQSVLPEVFQQKIAGMFTTGFRTRVTPRMRDILRAHLFPEVTVKQNSQIKIMDIQQEILA
RNIGDGHRVIHGVAGSGKTMILLFRCLYLAETTPGKILVLCYNITLASYLRECIEARGLASRVTVSHFHSWCASMVKRHG
IKVTADRKEYPDKCFSALEEAVNSGKITRTGYDAVLVDEGHDFDSRWLALIARLFDNASRSLLLMYDDAQSIYRRERALN
FSLASVGIQAQGRTSVLPVNYRNPKRILHFAYAFSREYFEKHQNREIPLVQPQAGGEEGTEPEILRCASERDEARQVADW
LEKRHALCGHWSDMAVLCPTERSAQQLQDVMTLRGVPFATCFDREGKKTYSRRKDVVHLLTYQSSKGLEFPYVAVINASF
VPSGVADESEVIPVLYVAFTRATRELLVTCYRENSISRHLEDFA
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