PAI Gene Information


Name : phfD
Accession : AAO17172.1
PAI name : tcd island
PAI accession : AF346500
Strain : Photorhabdus luminescens TTO1
Virulence or Resistance: Virulence
Product : PhfD
Function : -
Note : PhfD-like; type I fimbrial usher Photorhabdus luminescens NC19 found in GenBank Accession Number AAK16068
Homologs in the searched genomes :   5 hits    ( 5 protein-level )  
Publication :
    -ffrench-Constant,R.H., Bowen,D.J. and Waterfield,N.R., "Direct Submission", Submitted (19-JAN-2001) Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK.

    -Waterfield,N.R. and ffrench-Constant,R.H., "Direct Submission", Submitted (22-AUG-2002) Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK REMARK Sequence update by submitter.

    -Waterfield,N.R., Bowen,D.J., Fetherston,J.D., Perry,R.D. and ffrench-Constant,R.H., "The tc genes of Photorhabdus: a growing family", Trends Microbiol. 9 (4), 185-191 (2001) PUBMED 11286884.

    -Waterfield,N.R., Daborn,P.J. and ffrench-Constant,R.H., "Genomic islands in Photorhabdus", Trends Microbiol. 10 (12), 541-545 (2002) PUBMED 12564983.


DNA sequence :
GTGAAAAAAATAATCAGTTTTGCTTTAATGATTTGTTGTTTATCGTTGCCAGCATATGCAGAGCTGTATTTCGATATCAA
TGCATTACAACTATCAGACGAAGACAAAGAAAATATTAATCTGGAGAGTTTGGCAAAAACGGACTCCCACATTCCAGGCG
TCTATAAAGTTAATGTTATCGTCAATAAAAAGGATATCGGCGTTAAAAGCCTATCCTTTATTAACTGTGGTGAAAAACTT
TGTCCTGAATTATCTATCAGTTTATTGAAAGAAATCGGGGTAAAAACAGCAAGCTTCCCAGAATTAGCATCCCTTGCTGA
ACAAGAGATCATTTCTCAACCGGAAAAATATATTAAACAGGCGTCAGCAGAACTGGATTTAAGCGCTCTGACGCTGATGT
TGAATTTTCCGCAAGCTGCCATGCAATCACAAATCAGGGGAGATATCTCTCCTGATCAATGGGATGATGGTTTGCCGATG
TTTTTCACCAATTATCATTTAACAGGAATGCAATCCTGGAACAAAAATCAAAGTGAACAGAATCAATATCTGAATTTACG
TAGCGGCTTTAATTTAGGTCCGTGGCGAATTCGTCATAATAGTTACTACAACCATACCGGTACAACATCTGAATGGAAAT
CGCTTAAAGCCTATGCTGAACGGGATATTCGACCATTGAGATCTCGACTGGTATTAGGCGAAACATCCACCGATAGCATG
GTATTCGATAGTTTCACCTTTAATGGCATTAAATTGATGTCTGATAGCCAAATGTTGCCAGATAGCCAACAAGGGTTTGC
GCCTGTTGTACGCGGTATCGCGATGACTCACGCAAGAGTAGAAGTGCACCAGAAAGATAATATTATTTATCAAACTTTTG
TTCCACCCGGCGCTTTTGAAATTACTGATATTTACCCCAGTAACCTGAATGGTGATCTGGAAATATCCATTTATGAAGAG
AATGGCAATGTCAGAAAATTTACTCAGCCCTTTGCTGCCTCACCATTGATGATCCGTTCCGGTCAAATGAAATATTTTGC
TAATATCGGTAAATTCAGCGGTGGCAAACAGGCTAGTAAAAAAAGATTTATTCAGACAGAAGCTATTTACGGGCTATGGG
ATAGCACCACCATTTATGGCGGAGTTATTGTTTCTTCTGACTATCAAAGTCATGCATTAGGTTTAGGACATAATTTAGGA
AAAATTGGCGCGGTATCAATCGATGTCACCAATGCAGCAACTCATTTCCCAAATGGAGAAAAGAAAAGCGGACAATCTTA
TCAAATACGCTACAGTAAAGGTTTTACTGAAACCAATACAACGGTGACATTGGCAGGTTATCGCTACAATACCAATGGTT
ATTACAGCTTTAGCGATGCTAATAACTATTCCTATAATAACTATACCAATAATAACCACCAATTTACGGATAATAACAGA
AATAGCGCGCCTAAAAACCGGATGCAAATAACAATGGGCCAAAGCTTAGGGCAATATGGCAGCCTTTCATTATCGGCCTG
GCAACAAGATTACTGGCAAGATAAAACCAGTAAGAATCAGTCATATTCTATGTCCTATAATACTAATATTCGTGATATCT
CTTTGTCATTGAGCTATAATTACCATCGTAATCGCTCAAACATTAATAACGATCAAGTATTTTCATTCAATATCAGTATT
CCTCTGGATAAATGGCTGCCATCAAACAATCATAGTGCATCGGTAGATTATGATACCTCCTATAACATCAACGGCAGCAG
CCAGCATTCAATGACATTATCCGGCTCTTTACTGGAACAACAGAATCTGAACTATACTATTTCTCAAAATTACAGTTATG
AAAAATCAGAGAAAGAAAAAGAATCAGGTAATGCCGCTAGTTTATATTACCGAGGTTCATATGGTTCAATTAATGTAGGT
TACACTACTGATCATAGAAAAAATCAGCGGGTTAATTATGGATTAGAGGGAGCGATTATTGCCCATCCCTATGGCGTTAC
CCTGGCGCAAAATATTAGCGAAAGCGGCTCCAGTGCTTTAATTCGTGCCCCCGGAGCAACCAATGCCAAGGTACTGAATA
ATACCTCTATCAGTACAGATTGGCGAGGATATACCGTTGTGCCTTATATATCGCAATATCGGGAAAATATGTTATCTCTT
GATACCAATACATTCGGTGATGACGTAGATATTGATAATCCAACCACAAAGGTCATTCCAACCAAGGGGGCTTTAGTATT
GGCGGATTATTCTATTCGTGTTGGTCATCGAGTATTTTTAACTTTACAACATCACGGTAAGAAACTTCCATTCGGCACAG
TCATTACGGGTCCAAATGGCGTTAATGGTATGGTGAATGAAAAGGGAGAAGTTTTCCTCAGTGGTGTGAGTGACACAGCA
AAATTAACAGCCGATTTAGGCGATAAACAAAACTGTCATATTCAATTTGATAGTAAATTATATCAAAAAATTAATGGTAT
TATTCTGACTTCATTGCATTGTCAGTAA

Protein sequence :
MKKIISFALMICCLSLPAYAELYFDINALQLSDEDKENINLESLAKTDSHIPGVYKVNVIVNKKDIGVKSLSFINCGEKL
CPELSISLLKEIGVKTASFPELASLAEQEIISQPEKYIKQASAELDLSALTLMLNFPQAAMQSQIRGDISPDQWDDGLPM
FFTNYHLTGMQSWNKNQSEQNQYLNLRSGFNLGPWRIRHNSYYNHTGTTSEWKSLKAYAERDIRPLRSRLVLGETSTDSM
VFDSFTFNGIKLMSDSQMLPDSQQGFAPVVRGIAMTHARVEVHQKDNIIYQTFVPPGAFEITDIYPSNLNGDLEISIYEE
NGNVRKFTQPFAASPLMIRSGQMKYFANIGKFSGGKQASKKRFIQTEAIYGLWDSTTIYGGVIVSSDYQSHALGLGHNLG
KIGAVSIDVTNAATHFPNGEKKSGQSYQIRYSKGFTETNTTVTLAGYRYNTNGYYSFSDANNYSYNNYTNNNHQFTDNNR
NSAPKNRMQITMGQSLGQYGSLSLSAWQQDYWQDKTSKNQSYSMSYNTNIRDISLSLSYNYHRNRSNINNDQVFSFNISI
PLDKWLPSNNHSASVDYDTSYNINGSSQHSMTLSGSLLEQQNLNYTISQNYSYEKSEKEKESGNAASLYYRGSYGSINVG
YTTDHRKNQRVNYGLEGAIIAHPYGVTLAQNISESGSSALIRAPGATNAKVLNNTSISTDWRGYTVVPYISQYRENMLSL
DTNTFGDDVDIDNPTTKVIPTKGALVLADYSIRVGHRVFLTLQHHGKKLPFGTVITGPNGVNGMVNEKGEVFLSGVSDTA
KLTADLGDKQNCHIQFDSKLYQKINGIILTSLHCQ