Name : unnamed
Accession : AAK20774.1
PAI name : VPI
PAI accession : AF325733
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Not determined
Product : unknown
Function : -
Note : ORF2; frameshift results in longer ORF2 than that of Vibrio cholerae strain N16961
Homologs in the searched genomes : 1 hits ( 1 protein-level )
Publication :
-Karaolis,D.K., Lan,R., Kaper,J.B. and Reeves,P.R., "Comparison of Vibrio cholerae pathogenicity islands in sixth and seventh pandemic strains", Infect. Immun. 69 (3), 1947-1952 (2001) PUBMED 11179381.
-Karaolis,D.K.R., Lan,R., Kaper,J.B. and Reeves,P.R., "Direct Submission", Submitted (03-DEC-2000) Department of Microbiology, University of Sydney, Sydney, NSW 2006, Australia.
| DNA sequence : | |
ATGTTCAATAAAAAAATTACAATAACTTCAACTGGTATTACGTTGTCTATTTTTTCCTTTATGGCTAAAGCTGATCCTAA
AATTAATTTCGCAGTGGATTATTTCTCTTATGGTAGTAATGGAAGATGTATGGTTGCTATGGAGATCGAAAAAAGTAATT
TAAATGAAATATATAATATAATTAATAAAAATCACTTTGATATCGATTTTGAAGTTTTACTGTATGAGAAAGATAAAAAT
GGAAAAATTGAGAAGCCTCATGGTACAGAGATGGTTAAATTCAAATTTAATGAATTTGATAACCTTGTTCATGATCATGT
TATTGTCATGTCAAAAATGGAACTTCCATATTCATGGTGGCATGAATGTAAAGTCTTAAGTGTTAATTTATCAGATAAGA
AATATGCTAAAGTTACAATATATGACGATTTTAATGGCGACGTTTCATTTAGAAATATAGTTGAAAATAATAAGATTTCC
AGTTTTGATTTCTTTTCTGATATAGTAAACATGGCATTCGCCTATAGAATGAAAGATGAAAAACCAACAGAGAATGAGAT
CCTCCAGAACATATCCAAAATGAAAAGTTATAATAATGGAAAGTCAGGGAATGAATCACTAAATAGAAAAATTATTGGAT
ATACAAACACTATATCTTTAGGAGATAGTGGTATAAATGGTTCTATAGGTTTTAATATATCTGAAGATTTCATTAAATTA
CGAACAAAAGATAAGATCAATAATTTTATAAAAGAAAAAATCGTAAAACCTGCAGTAGAAGTTGGTATCGTTGATCGTAA
ATTTCAAGAATCAAAGTATATTGATGAATTAAGACAGAGACTACTAAAAAGTTTAAATCAAGATCATTACTTTGAATATG
GTTCAGAGAAAAATTTGCAATTATCATTGGTAATGATGTTCTCAGACTTGTACAGTCAGCCTATATTATCCTACGGAAAA
ACGATACCTGCATACAGCGATTCCTTTTTTAGTGATTTATGGGAGTCAATGTTAAGTGGATTCATCAATAGTATTGAACC
TGTGAAATTATATGAACATGAGTCATATCATGGGCATTCGATATCATTAAACATGGATAGTGAATTTTTGCATGGCTTTA
ATGATATTGCTTCATCAATAAAAATTCCGAAAGGGTGGCAAGTTACTTTATTTGAACATGGCGGATTTACTGGTTCTTCT
ATTGTAGCTAATAGTGATATTAAGGCATTAGGAGAGAAGAATCTGAATGATACGGTAAGTTCTTTGATGGTTGAGTATGT
CGGTGATGATCCTTCCGAACTCTATGACATGTTATTGTTGACCATCAATTATGGTAACCTCTCAGGTATAGATTTTTCTC
GCGAAATTTTTAATAAAAATAAGGATATTATAGTTGACTATAAAAAGGGTACCATTAACCATAGAGGTATTACTGGTGGA
TTTTTGGGGAAGACTTTTGCTCAAGTTGCAGCCATTTTGTATCAAAAATCTATTGAGGAGCTCAGCTATATTGAGTTACT
GAGTACTAAAAATGCATTAGAAAGTATTGGTATTGACACCGTATACCCTTATGGCAGTATGGATAATATAAAAGCAAGTC
TATTCTTGAGGATCAACAATAATCTATCAAAAACGTTACTTCCTGAAGAGGTCGGTATTGGATCTGAGCCATTTATTATT
GATGAATTATTGGCAAAAATAATCAATTAA
|
| Protein sequence : | |
MFNKKITITSTGITLSIFSFMAKADPKINFAVDYFSYGSNGRCMVAMEIEKSNLNEIYNIINKNHFDIDFEVLLYEKDKN
GKIEKPHGTEMVKFKFNEFDNLVHDHVIVMSKMELPYSWWHECKVLSVNLSDKKYAKVTIYDDFNGDVSFRNIVENNKIS
SFDFFSDIVNMAFAYRMKDEKPTENEILQNISKMKSYNNGKSGNESLNRKIIGYTNTISLGDSGINGSIGFNISEDFIKL
RTKDKINNFIKEKIVKPAVEVGIVDRKFQESKYIDELRQRLLKSLNQDHYFEYGSEKNLQLSLVMMFSDLYSQPILSYGK
TIPAYSDSFFSDLWESMLSGFINSIEPVKLYEHESYHGHSISLNMDSEFLHGFNDIASSIKIPKGWQVTLFEHGGFTGSS
IVANSDIKALGEKNLNDTVSSLMVEYVGDDPSELYDMLLLTINYGNLSGIDFSREIFNKNKDIIVDYKKGTINHRGITGG
FLGKTFAQVAAILYQKSIEELSYIELLSTKNALESIGIDTVYPYGSMDNIKASLFLRINNNLSKTLLPEEVGIGSEPFII
DELLAKIIN
|
|
