Name : tnpB
Accession : AAC44710.2
PAI name : cag PAI
PAI accession : U60177
Strain : Helicobacter pylori 2017
Virulence or Resistance: Not determined
Product : TnpB
Function : -
Note : IS1341 transposase homolog; non-ATG initiation codon
Homologs in the searched genomes : 60 hits ( 55 protein-level, 5 DNA-level )
Publication :
-Censini,S., Lange,C., Xiang,Z., Crabtree,J.E., Ghiara,P., Borodovsky,M., Rappuoli,R. and Covacci,A., "cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors", Proc. Natl. Acad. Sci. U.S.A. 93 (25), 14648-14653 (1996) PUBMED 8962108.
-Censini,S., Rappuoli,R., Lange,C. and Covacci,A., "Direct Submission", Submitted (06-JUN-1996) Molecular Biology, Chiron-Biocine, Via Fiorentina 1, Siena, SI 53100, Italy.
| DNA sequence : | |
TTGCTTAACGCTATCAAGTTTAGAATTTATCCTAACGCTCAACAAAAAGAGCTTATTTCTAAACATTTTGGCTGTTCTAG
GGTCGTGTATAACTACTTTTTAGATTACCGACAAAAGCAATACGCAAAAGGCATTAAAGAAACTTACTTCACCATGCAAA
AAGTCTTAACCCAAATCAAGCACCAAGAAAAATACCATTACCTCAATGAATGCAATTCTCAAAGCTTGCAAATGGCGTTA
AGACAGCTTGTGAGTGCTTATGATAATTTCTTTAGCAAAAGAGCGAGATACCCTAAATTCAAATCTAAAAAAAACGCTAA
ACAATCTTTTGCAATCCCCCAAAACATAGAAATCAAAACAGAGACTCAAACCATCGCTCTCCCTAAATTCAAAGAGGGCA
TTAAGGCTAAATTACACAGAGAATTGCCTAAAGATAGCGTTATCAAACAGGCTTTTATTTCTTGCATAGCCGATCAATAT
TTTTGTTCTATATCCTATGAAACCAAAGAGCCTATCCCTAAACCTACCATCATTAAAAAAGCGGTAGGTTTAGACATGGG
CTTAAGAACGCTCATTGTTACAAGCGATAAAATAGAATACCCACACATCCGTTTTTATCAAAAATTAGAAAAGAAACTCA
CTAAAGCGCAAAGGAGGTTAAGTAAAAAAGTAAAAGGCTCCAACAACAGGAAAAAACAAGCTAAAAAGGTAGCTAGATTG
CATCTAGCTTGTTCAAACACTAGAGATGACTACTTGCATAAAATCAGTAATGAGATAACCAATCAATACGATTTGATAGG
GGTAGAAACTTTGAATGTTAAGGGGCTTATGAGAACCTATCATTCTAAAAGCCTTGCTAATGCGAGTTGGGGGAAATTCC
TTACTATGCTAAAATACAAAGCCCAAAGAAAAGCTAAAACCCTATTAGGCATAGACAGATTTTTCCCTAGCTCTCAATTG
TGTTCTTATTGTGGGTTCAATACAGGCAAAAAACATGAAAACATCACTAAATTCACTTGTCCTCATTGCAATATCACACA
CCACAGAGATTACAATGCGAGCGTCAATATTAGAAACTACGCTTTAGGCATGCTAGATGACAGGCATAAAATAAAGATAG
ATAAAAGTAGGGTAGGGATTATCCGAACTGATTACGCTCATTACACTGATGAGCGCATCAAAGCTTGTGGAGCTTCCTCT
AATGGGGTTATTTCTAAATATGGCAACATATTGGATCTAGCTAGTTATGGAGCGATGAAGCAAGAAAAAGCCCAATCGCT
TTAG
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| Protein sequence : | |
MLNAIKFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIKHQEKYHYLNECNSQSLQMAL
RQLVSAYDNFFSKRARYPKFKSKKNAKQSFAIPQNIEIKTETQTIALPKFKEGIKAKLHRELPKDSVIKQAFISCIADQY
FCSISYETKEPIPKPTIIKKAVGLDMGLRTLIVTSDKIEYPHIRFYQKLEKKLTKAQRRLSKKVKGSNNRKKQAKKVARL
HLACSNTRDDYLHKISNEITNQYDLIGVETLNVKGLMRTYHSKSLANASWGKFLTMLKYKAQRKAKTLLGIDRFFPSSQL
CSYCGFNTGKKHENITKFTCPHCNITHHRDYNASVNIRNYALGMLDDRHKIKIDKSRVGIIRTDYAHYTDERIKACGASS
NGVISKYGNILDLASYGAMKQEKAQSL
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