Gene Information

Name : DGI_2558 (DGI_2558)
Accession : YP_008591461.1
Strain : Desulfovibrio gigas ATCC 19364
Genome accession: NC_022444
Putative virulence/resistance : Resistance
Product : putative class D beta-lactamase precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2674767 - 2675567 bp
Length : 801 bp
Strand : +
Note : -

DNA sequence : 
TTGACGATGCTGTGCTGCCTTGTGCTGCTCTGCGCCTGCGCCGGACGCAGGCAGGCCCCTTCCGCCACCATCGAACGCCC
CCAGTGGGGGCAGGCGTTCCAGCAGGCCGGTCTCCAGCCTGCCCAGGGAACCATGGTGCTGCTGCACGACGGCGCCGATG
CCGTGCAGGTGTACAACCCGGCCCGGGCCGCCACGCCCATGCTCCCGGCATCCACCTTCAAAATCCTCAATGCCTGCATC
GCCCTGGAAACGGGCGTGGCCAGCGGGCCGGATCAGGTCTTTCCCTGGAACGGCGTCACGCATTCCGTCGCGGCCTGGAA
CAGGGATCTCACGCTGCAGGAGGCCTTTGCCGCCTCCAGCGTGCCGGTGTTTCAGGAGCTCGCCCGCCGGATCGGACACG
AGCGCATGCAGAAATACGTGCAGCAGGCGCGCTACGGCAATGCGAACATCGGCGGCGAGATCGATTCCTTCTGGCTGCGC
GGAGCCCTGCGCATCTCCGCCCGGGAGCAGCTCGACTTCCTGCAGCGCCTGTACCACAATCGGCTGCCCTTTTCCAGACG
CACCATGGCCATGGTGAAGGATATCATGGTGGTGGAACAGGGACACGGCTGGACCCTGCGCGCCAAGACCGGCGTGGCCG
TCCAAGACACGCCGCACATCGGCTGGTGGGTGGGCTGGGTGGAGCGCGGCGAGAAGGTCTGGTTCTTCGCCCTGAATATC
GATGTCGCCGGCCCGGAGCAGTACGGCCTGCGGCAGCAGATCGTCAAGACCATCCTCAAGGCCGAGGGCATCCTGCCGTA
A

Protein sequence : 
MTMLCCLVLLCACAGRRQAPSATIERPQWGQAFQQAGLQPAQGTMVLLHDGADAVQVYNPARAATPMLPASTFKILNACI
ALETGVASGPDQVFPWNGVTHSVAAWNRDLTLQEAFAASSVPVFQELARRIGHERMQKYVQQARYGNANIGGEIDSFWLR
GALRISAREQLDFLQRLYHNRLPFSRRTMAMVKDIMVVEQGHGWTLRAKTGVAVQDTPHIGWWVGWVERGEKVWFFALNI
DVAGPEQYGLRQQIVKTILKAEGILP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 3e-49 43
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 3e-48 43
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 3e-48 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor AY500137.1.gene1.p01 Protein 6e-53 48
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor HQ700343.1.gene1.p01 Protein 4e-49 47
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor JN205800.1.gene6.p01 Protein 4e-51 47
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor HM015773.1.gene6.p01 Protein 3e-51 47
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor AY306130.1.gene1.p01 Protein 2e-42 46
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor AY343493.1.gene1.p01 Protein 1e-44 45
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor X75562.1.gene1.p01 Protein 1e-46 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor AM412777.1.gene1.p01 Protein 4e-49 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor U37105.2.gene2.p01 Protein 2e-49 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor AF231133.1.gene3.p01 Protein 4e-48 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor U59183.1.gene3.p01 Protein 1e-49 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor AY445080.1.gene1.p01 Protein 3e-49 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor NC_010410.6002874.p0 Protein 2e-49 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor AM932669.1.gene2.p01 Protein 2e-48 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor X58272.1.gene1.p01 Protein 1e-47 43
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor AJ854182.1.gene1.p01 Protein 4e-49 42
DGI_2558 YP_008591461.1 putative class D beta-lactamase precursor Z22590.1.gene1.p01 Protein 7e-49 42