Gene Information

Name : DGI_2301 (DGI_2301)
Accession : YP_008591225.1
Strain : Desulfovibrio gigas ATCC 19364
Genome accession: NC_022444
Putative virulence/resistance : Virulence
Product : putative two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2413799 - 2414479 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATCCTCGTCGTGGAAGACGACATGGAAGCCGCGGCCTATATGGCCAAGGGCCTCAAGGAAAGCGGCTACACCGT
GGACCACGCTGCCGATGGCAAAGACGGCCTGTTCAAGGCCGCCAGCGAGAACTACGACGCCATTGTCATGGACCGCATGC
TGCCCGGCGTGGACGGCCTGACCATCCTGCGCACCCTGCGTTCCGCCGGCAACATGACGCCGGTGCTCATCCTCTCTGCC
CTGGGCGAGGTGGACGACCGCGTGACCGGCCTGAAGGCCGGCGGCGACGACTACCTCACCAAGCCGTATGCCTTTTCCGA
ACTGCTGGCCCGTCTGGAAGCCCTGCTGCGTCGCGGGCAGGACGGCGCAGCGGTGACGCGTCTGAAGGTGGCAGACATGG
AAATGGACCTCATTGCCCGCAAGGTTTCCCGCGGCGGCAAGGTGGTGGAGCTGCAGCCCAAGGAATTTTCCCTGCTGGAA
TACCTCATGCGCCACGCCGGGCATGTGGTGACCCGGACCATGCTGCTGGAAAATGTCTGGGACTATGCCTTTGATCCGCA
AACCAACGTCATTGATGTGCACATCTCCCGGCTGCGCCAGAAAATCGACAAGGGATTCCAGAAGCCCCTGCTGCACACTG
TGCGCGGCGTGGGGTACACGGTGCGCGAGCCGGCAGAATAA

Protein sequence : 
MRILVVEDDMEAAAYMAKGLKESGYTVDHAADGKDGLFKAASENYDAIVMDRMLPGVDGLTILRTLRSAGNMTPVLILSA
LGEVDDRVTGLKAGGDDYLTKPYAFSELLARLEALLRRGQDGAAVTRLKVADMEMDLIARKVSRGGKVVELQPKEFSLLE
YLMRHAGHVVTRTMLLENVWDYAFDPQTNVIDVHISRLRQKIDKGFQKPLLHTVRGVGYTVREPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-44 48
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-43 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family BAC0125 Protein 3e-49 51
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family BAC0347 Protein 5e-49 50
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family BAC0197 Protein 1e-46 50
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family BAC0083 Protein 1e-49 49
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family BAC0111 Protein 5e-51 49
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family BAC0638 Protein 7e-43 48
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family BAC0308 Protein 4e-43 47
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family AE015929.1.gene1106. Protein 3e-25 42
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_003923.1003417.p0 Protein 2e-29 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_013450.8614146.p0 Protein 2e-29 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_002951.3238224.p0 Protein 2e-29 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_007793.3914065.p0 Protein 2e-29 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_002758.1121390.p0 Protein 2e-29 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_010079.5776364.p0 Protein 2e-29 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_002952.2859858.p0 Protein 2e-29 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_007622.3794948.p0 Protein 2e-29 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family BAC0487 Protein 1e-27 41
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family NC_002516.2.879194.p Protein 1e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family VFG0596 Protein 7e-45 48
DGI_2301 YP_008591225.1 putative two component transcriptional regulator, winged helix family VFG1389 Protein 5e-34 43