Gene Information

Name : atoC (CPE2_0160)
Accession : YP_008582397.1
Strain : Chlamydia pecorum W73
Genome accession: NC_022440
Putative virulence/resistance : Virulence
Product : sigma-54 dependent DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 156783 - 157943 bp
Length : 1161 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTATAGAGCATATTCTTATTATAGACGATGATCCTCTTCTTCAAGAGTTTCTCTTTGAGCTCTTATCCTCCCGAGG
CTATTTCCCCTCAGTAGCTGAAAATATCTCCATAGCGAAGAAAAAGATCAAAGCAAACCGTTATGATCTTATTATTTCCG
ATATGAACATGCCCGATGGAACGGGAATGGATGTGATTCATCTCACAAAGCAGCGCTCTCCAAGAACGCCGATTCTTATG
ATTACAGCCTATGGCTCCATAGAAAACGCAGTGGAAGCCATGCGCCAGGGGGCCTTTAATTACCTAACAAAGCCGTTCTC
CTCAGAAGCCCTCCTTGCCTTCATCTCAAAAGCTGAAGAGCTACAAAACCTTGTTCAAGAAAATCTCTTTTTAGCCTCCC
AAACGACAACGAGCTCCTACCCTCTCATTGCCGAAAGCCAAGTGATGAAAAATCTTCTTGCCAAAGCAAAGAGAGCCGCC
CAAAGCTCCGCGAATCTCTTTATTCACGGGGAATCAGGATGCGGAAAAGAAATCCTCTCATTTTTTATTCATACGAACTC
CCCAAGAGCACACCGCCCCTATATCAAAGTCAACTGCGCAGCAATCCCAGAAACACTCTTAGAATCTGAATTCTTCGGAC
ACGAAAAAGGTGCTTTTACAGGAGCAACAACAAAAAAAGCCGGTCGCTTTGAGCTGGCTCATAAAGGAACTCTCCTCCTT
GATGAAATTACAGAGATCCCCCTGAACCTCCAAGCCAAACTCCTAAGAGCTATCCAAGAAAAAGAATTTGAACATCTCGG
AGGAACAAAAACTGTTTCCGTAGATGTTCGCATCCTCGCCACCTCTAACCGCGACCTTAAAGAGGCCATCCAAGAGAAAA
TCTTCCGTCAAGATCTCTATTACCGCCTGAATGTGATCCCTCTCTACCTCCCTCCATTAAGAGAACGTAAAGATGACATC
CTGCCCCTAGCAACCTACTTCCTAAAGAAATTCTGCCACCAAAATAATGCGCCAGCAAAGACTCTCTCCTCAGAAGCAAA
AAAACTCCTTATCGAATACCCTTGGCCCGGGAATATCCGCGAGCTCTCCAATGTTTTGGAGCGCGCTGTAATCTTAGAAA
GCAGCACTTCCCTGACAAAGGAAATGCTCTCCTTAAACTAA

Protein sequence : 
MSIEHILIIDDDPLLQEFLFELLSSRGYFPSVAENISIAKKKIKANRYDLIISDMNMPDGTGMDVIHLTKQRSPRTPILM
ITAYGSIENAVEAMRQGAFNYLTKPFSSEALLAFISKAEELQNLVQENLFLASQTTTSSYPLIAESQVMKNLLAKAKRAA
QSSANLFIHGESGCGKEILSFFIHTNSPRAHRPYIKVNCAAIPETLLESEFFGHEKGAFTGATTKKAGRFELAHKGTLLL
DEITEIPLNLQAKLLRAIQEKEFEHLGGTKTVSVDVRILATSNRDLKEAIQEKIFRQDLYYRLNVIPLYLPPLRERKDDI
LPLATYFLKKFCHQNNAPAKTLSSEAKKLLIEYPWPGNIRELSNVLERAVILESSTSLTKEMLSLN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-64 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-64 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
atoC YP_008582397.1 sigma-54 dependent DNA-binding response regulator BAC0467 Protein 3e-75 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
atoC YP_008582397.1 sigma-54 dependent DNA-binding response regulator VFG1249 Protein 1e-78 48
atoC YP_008582397.1 sigma-54 dependent DNA-binding response regulator VFG1214 Protein 1e-72 45
atoC YP_008582397.1 sigma-54 dependent DNA-binding response regulator VFG0116 Protein 4e-66 42