Gene Information

Name : yjcC_2 (ECOPMV1_04512)
Accession : YP_008574220.1
Strain : Escherichia coli PMV-1
Genome accession: NC_022370
Putative virulence/resistance : Virulence
Product : putative membrane protein YjcC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4617151 - 4618737 bp
Length : 1587 bp
Strand : +
Note : -

DNA sequence :
ATGAGTCATCGTGCACGACACCAATTACTGGCGTTTCCGGGCATTATCTTTTTAGTTCTCTTTCCCATCATTCTGTCGCT
ATGGATTGCCTTCTTTTGGGCAAAATCAGAAGTGAATAATCAGCTCCGAACCTTTGCTCAGCTGGCGTTGGATAAATCTG
AGCTGGTCATTCGTCAGGCAGATTTAGTGAGCGATGCAGCTGAACGCTATCAGGGGCAAGTTTGCACTCCAGCCCATCAA
AAGCGAATGTTGAATATTATTCGTGGCTATCTTTATATTAATGAATTGATTTATGCTCGTGATAACCATTTTTTATGCTC
ATCGCTGATAGCGTCTGTAAATGGCTATACGATTGCACCGGCCGATTATAAGCGCGAACCTAACGTTTCTATCTATTATT
ACCGTGATACGCCTTTTTTCTCTGGCTATAAAATGACCTACATGCAGCGGGGAAATTATGTGGCGGTTATCAACCCTCTC
TTCTGGAGTGAAGTGATGTCTGATGATCCGACATTGCAATGGGGAGTGTATGATACGGTGACGAAAACCTTTTTCTCGTT
AAGCAACGAGGCCTCGGCAGCAACGTTTTCTCCGCTGATTCATTTGAATGATTTAACCGTACAACGAAATGGCTATTTAT
ATGCGACAGTTTATTCGACAAAACGCCCAATTGCAGCCATTGTTGCGACTTCATATCAACGTCTTATAACTCATTTTTAT
AATCATCTTATTTTTGCGTTGCCCGCCGGTATTTTGGGGAGTCTTGTTCTGCTATTACTCTGGCTACGTATTCGACAAAA
CTATTTGTCTCCCAAACGCAAATTGCAACGCGCCCTCGAAAAACATCAACTTTGCCTTTATTACCAGCCAATAATCGATA
TCAAAACAGAAAAATGTATCGGCGCTGAAGCGTTGTTACGTTGGCCTGGTGAGCAGGGGCAAGTAATGAATCCGGCAGAG
TTTATTCCGCTGGCAGAAAAGGAGGGGATGATCGAACAGGTAACTGATTATGTTATTGATAATGTCTTCCGTGATTTGGG
CGCGTATCTGGCAACACATACCGATCGCTATGTTTCTATTAACCTGTCAGCCTCCGATTTTCATACCTCACGGTTGATAG
CGCGAACCAATCAGAAAACAGAGCAACATGCGGTGCGTCCGCAGCAAATTAAATTTGAAGTGACTGAACATGCATTTCTT
GATGTCGACAAAATGACGCCGATTATTCTGGCTTTCCGCAAGGCCGGTTACGAAGTGGCAATTGATGATTTTGGTATTGG
CTACTCTAACTTGCATAACCTTAAATCATTGAATGTCGATATTTTGAAAATCGATAAATCGTTTGTTGAGACGCTGACCA
CCCACAAAACCAGTCATTTGATTGCGGAACACATCATCGAGCTGGCGCACAGCCTGGGGTTAAAAACGATCGCTGAAGGT
GTCGAAACTGAGGCGCAGGTTAACTGGCTGCGCAAACGCGGCGTGCGCTATTGCCAGGGATGGTTCTTCGCGAAGGCGAT
GCCGCCGCAGGTGTTTATGCAATGGATGGAGCAATTACCCGCGCGGGAGTTAACGCGCGGGCAATAA

Protein sequence :
MSHRARHQLLAFPGIIFLVLFPIILSLWIAFFWAKSEVNNQLRTFAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQ
KRMLNIIRGYLYINELIYARDNHFLCSSLIASVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPL
FWSEVMSDDPTLQWGVYDTVTKTFFSLSNEASAATFSPLIHLNDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFY
NHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAE
FIPLAEKEGMIEQVTDYVIDNVFRDLGAYLATHTDRYVSINLSASDFHTSRLIARTNQKTEQHAVRPQQIKFEVTEHAFL
DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEG
VETEAQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLPARELTRGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yjcC YP_219130.1 diguanylate cyclase/phosphodiesterase Not tested SPI-4 Protein 9e-160 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yjcC_2 YP_008574220.1 putative membrane protein YjcC VFG0584 Protein 2e-160 65