Gene Information

Name : ycgE_2 (ECOPMV1_02288)
Accession : YP_008572113.1
Strain : Escherichia coli PMV-1
Genome accession: NC_022370
Putative virulence/resistance : Virulence
Product : HTH-type transcriptional repressor YcgE
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2359009 - 2359740 bp
Length : 732 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGCTTTACACAATTGGTGAAGTGGCGTTGCTTTGTGATATTAACCCTGTCACGTTACGCGCGTGGCAGAGGCGTTA
CGGATTGCTGAAACCACAACGGACAGACGGCGGTCATCGGCTGTTCAACGATGCCGATATTGACCGGATCCGCGAGATCA
AACGCTGGATCGACAACGGCGTGCAGGTCAGCAAAGTAAAAATGCTGCTCAGTAATGAAAATGTTGATGTGCAGAACGGC
TGGCGCGATCAGCAAGAAACATTACTGACTTACCTGCAAAGCGGCAATCTGCATAGCCTGCGAACGTGGATCAAAGAGCG
CGGTCAGGATTACCCCGCCCAGACACTCACCACACATCTGTTTATTCCTCTGCGCCGACGGCTTCAGTGCCAACAAGCGA
CTCTCCAGGCGCTGCTGGCGATCCTCGACGGCGTACTGATCAACTACATCTCTATTTGCCTGGCTTCGGCGCGCAAAAAA
CAGGGTAAAGATGCACTGGTGGTTGGCTGGAATATTCAGGATACCACTCGTCTGTGGCTGGAGGGCTGGATTGCCAGTCA
ACAAGGATGGCGCATTGATGTCCTCGCCCACTCGCTCAATCAACTACGCCCTGAACTGTTCGAAGGCCGTACATTGCTGG
TATGGTGCGGTGATAATCGAACCTCCGCCCAACAACAGCAACTCACCAGTTGGCAGGAACAAGGCCATGATATTTTCCCA
CTCGGCATTTAA

Protein sequence : 
MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKMLLSNENVDVQNG
WRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQATLQALLAILDGVLINYISICLASARKK
QGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGDNRTSAQQQQLTSWQEQGHDIFP
LGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1411 YP_216398.1 MerR family transcriptional regulator Not tested SPI-2 Protein 1e-41 44
orf242 NP_460355.1 regulatory protein Not tested SPI-2 Protein 7e-42 44
STY1730 NP_456138.1 putative transcriptional regulator Not tested SPI-2 Protein 4e-42 44
t1258 NP_805061.1 transcriptional regulator Not tested SPI-2 Protein 4e-42 44
ORF 242 CAB37409.1 - Not tested SPI-2 Protein 5e-42 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ycgE_2 YP_008572113.1 HTH-type transcriptional repressor YcgE VFG0491 Protein 3e-42 44