Gene Information

Name : irtA (ECOPMV1_02069)
Accession : YP_008571907.1
Strain : Escherichia coli PMV-1
Genome accession: NC_022370
Putative virulence/resistance : Virulence
Product : Iron import ATP-binding/permease protein IrtA
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.-
Position : 2078801 - 2080603 bp
Length : 1803 bp
Strand : -
Note : -

DNA sequence :
ATGTCATCTCAATCATCCAATACTGAATCGCTGTCCCGATTTCCTCTCTGGCAGGTGATTACACCGGTTCGCAGGAAGGT
TATTTTAGCTATGGCGCTGGCGGGGCTGGCGGCATTAACCAGCCTGGGGGCGCTCCTTTTTCTGGCGTGGAGCCTGCGTG
ACATTCGCGCGACGCCTGACGCTATTCCGGCCTGGCCGCTGGGCGGCGTGATCGGCTGCGTGGTCTTAACTTTTGTTCTG
CGCTTACAGGCGTTCAACACCTCTCATTACGCGGCTTTTCATCTGGAGAACATTCTGCGCAGCAGGTTAGCCCGTAAAGC
ATTGCAGCTTCCGCCTGGCGTGTTACAGCAAATGGGCAGCGGGTCAGTGGCGAAAGTGATGCTGGATGACGTGAAGTCGT
TACATATTTTTGTGGCCGACAGCACGCCGCTCTATGCCCGCGCGATCATCATGCCGCTGGCGACAATCGTTATCTTGTTC
TGGCTGGACTGGCGGCTGGCAATCGCGACGCTGGGGGTACTGGCGTTTGGATCGGTTGTTCTCGTGCTCGCCCGCCAGCG
TTCGGAAAATATGGCTCAGCGTTATCATAAGGCGCGCGAGCAGGTTAGCGCGGCGGTTATTGAGTTCGTGCAGGCCATGC
CCGTGGTGAGAACGTTTGATAGCGGCAGCACCAGTTTTTTGCGCTATCAACGCGCCCTTGAAGAGTGGGTCGATGTGCTC
AAAACCTGGTATCGCAAAGCCGGTTTTTCAGCGCGTTTTTCCTTCTCGATTCTGAATCCTCTCCCGACCCTGTTTGTCCT
GATCTGGTCGGGATACGGCCTGTTGCACTATGGCAGTTTCGATTTTATCGCGTGGGTGGCCGTTTTACTGCTGGGCAGCG
GAATGGCCGAAGCCGTAATGCCAATGATGATGCTCAATAACCTGGTCGCGCAAACGCGTTTAAGCATTCAGCGTATTTAT
CAGGTTCTCGCGATGCCGGAGTTATCGCTGCCGCAGTCTGACCAGCAGCCGCAAGAGGCGAGCATTACCTTTGAGCAGGT
GAGCTTTCATTATCCGCAAGCGCGTACTGGCGCCGCGTTGCAGGAGGTGAGCTTTCATGTGCCTGCCGGGCAAATTGTGG
CGCTGGTCGGGCCAAGCGGCGCCGGAAAAAGCACCGTGGCGCGCTTGCTGCTGCGTTACGCCGACCCGGACAAAGGCCAT
ATCCGTATTGGCGGCGTGGATCTGCGTGATATGCAGACGGACACCCTGATGAAGCAACTCTCGTTTGTGTTTCAGGACAA
CTTCCTTTTTGCCGACACGATAGCCAATAACATTCGTCTGGGCGCGCCGGATACGCCGCTGGAGGCGGTTATAGCGGCGG
CCAGAGTGGCGCAGGCCCATGATTTTATTAGCGCTCTGCCAGAAGGTTACAACACTCGAGTCGGGGAACGTGGGGTATTT
CTCTCCGGCGGCCAGCGGCAGCGCATTACTATCGCCCGGGCGCTTTTGCAGGATCGCCCCATCCTGGTGCTCGATGAGGC
GACGGCGTTTGCTGACCCGGAAAACGAAGCGGCGCTTATCAAGGCGCTCGCGGCGGCCATGCGTGGCCGGACGGTCATCA
TGGTCGCGCATCGTCTCTCAATGGTGACTCAGGCCGATGTGATATTGCTGTTTTCCGACGGACAACTCAGGGAAATGGGG
AACCATACGCAACTGTTGGCGCAGGGCGGCCTGTATCAACGGCTCTGGCAACACTATCAGCAGGCGCAGCATTGGGTGCC
GGGTGGAACACAGGAAGAGGTGGTGGAAAATGAAAGACAATAA

Protein sequence :
MSSQSSNTESLSRFPLWQVITPVRRKVILAMALAGLAALTSLGALLFLAWSLRDIRATPDAIPAWPLGGVIGCVVLTFVL
RLQAFNTSHYAAFHLENILRSRLARKALQLPPGVLQQMGSGSVAKVMLDDVKSLHIFVADSTPLYARAIIMPLATIVILF
WLDWRLAIATLGVLAFGSVVLVLARQRSENMAQRYHKAREQVSAAVIEFVQAMPVVRTFDSGSTSFLRYQRALEEWVDVL
KTWYRKAGFSARFSFSILNPLPTLFVLIWSGYGLLHYGSFDFIAWVAVLLLGSGMAEAVMPMMMLNNLVAQTRLSIQRIY
QVLAMPELSLPQSDQQPQEASITFEQVSFHYPQARTGAALQEVSFHVPAGQIVALVGPSGAGKSTVARLLLRYADPDKGH
IRIGGVDLRDMQTDTLMKQLSFVFQDNFLFADTIANNIRLGAPDTPLEAVIAAARVAQAHDFISALPEGYNTRVGERGVF
LSGGQRQRITIARALLQDRPILVLDEATAFADPENEAALIKALAAAMRGRTVIMVAHRLSMVTQADVILLFSDGQLREMG
NHTQLLAQGGLYQRLWQHYQQAQHWVPGGTQEEVVENERQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtP YP_853073.1 inner membrane ABC-transporter Not tested PAI IV APEC-O1 Protein 0.0 100
ybtP NP_993009.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 0.0 99
irp6 YP_001006813.1 lipoprotein inner membrane ABC-transporter Not tested HPI Protein 0.0 99
ybtP YP_070126.1 lipoprotein inner membrane ABC-transporter Virulence HPI Protein 0.0 99
irp6 YP_002346904.1 lipoprotein inner membrane ABC transporter Not tested HPI Protein 0.0 99
ybtP CAA21388.1 - Virulence HPI Protein 0.0 99
ybtP NP_669704.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 0.0 99
irp6 CAB46573.1 lipoprotein inner membrane ABC-transporter, Irp6 Virulence HPI Protein 0.0 98

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irtA YP_008571907.1 Iron import ATP-binding/permease protein IrtA BAC0432 Protein 0.0 99