Gene Information

Name : LY180_22465 (LY180_22465)
Accession : YP_008567494.1
Strain : Escherichia coli LY180
Genome accession: NC_022364
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4701966 - 4702649 bp
Length : 684 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAAAACACAGCATGATTATCATGACCGCCTGTCTGTCAGGCTATCAGTCATTATCAGCCGCTTACTGGCTGGTGAATC
TCTGGAGCTTAAAGTATTAGCTGATGAATTTGGTGTCTCAGAACGCACCCTACAGCGGGATTTTCAGCAACGCCTGATCC
ATCTGGATCTTGAGCATCGCAGCGGAAGTTACCGACTTATCCGCCAAACAGGCCGGGAGCACTTACCCAATACATTTGCG
TTTATACGTAATTCAGGAATTTCAGGAATCATTCCGGCTCAGAACCGCAAGTTGATCCGGTTGATTGCCAGCAATTCCGG
CGTATCGCCGTGTCTTATTGGGCATGGGGCATTATCTTCTCCCGTCACGCAGACTGCCTGTTTTCTGGAACTGGCGGAAG
CTATCCGCGACTACCGCGCCGTTACATTATTAGTTAACGGTAAAAGCTACGAAGCAGTAGCTCCCCGCCGTCTGATATTT
CAGTCCAAAAACTGGTTTCTTGTTGCTACCCGCACCAGAAATTTACAGGTGTTTCGGATGGAAGACGTTAACGCCGTAAC
CGTTCTGGATACCTCTTTTCGCAGAAAGCCTGAACTTGATGCTCTGACTGCCAGTGAAGAGTTCATTTCAGCCCTCCCTC
ACTTTCGTTTCATAAGTGACGTAATTCAGACCTTCAGAGAGTAA

Protein sequence : 
MKTQHDYHDRLSVRLSVIISRLLAGESLELKVLADEFGVSERTLQRDFQQRLIHLDLEHRSGSYRLIRQTGREHLPNTFA
FIRNSGISGIIPAQNRKLIRLIASNSGVSPCLIGHGALSSPVTQTACFLELAEAIRDYRAVTLLVNGKSYEAVAPRRLIF
QSKNWFLVATRTRNLQVFRMEDVNAVTVLDTSFRRKPELDALTASEEFISALPHFRFISDVIQTFRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5160 NP_757008.1 transcriptional regulator YfjR Not tested PAI II CFT073 Protein 1e-49 48
APECO1_3492 YP_854319.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 1e-49 48
yfjR AAZ04453.1 transcriptional regulator Not tested PAI I APEC-O1 Protein 9e-50 48
unnamed CAD42094.1 hypothetical protein Not tested PAI II 536 Protein 6e-50 48
unnamed CAD33782.1 hypothetical protein Not tested PAI I 536 Protein 3e-50 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LY180_22465 YP_008567494.1 transcriptional regulator VFG1613 Protein 3e-50 48
LY180_22465 YP_008567494.1 transcriptional regulator VFG1523 Protein 2e-50 48