|
Name : LY180_15365 (LY180_15365) Accession : YP_008566137.1 Strain : Escherichia coli LY180 Genome accession: NC_022364 Putative virulence/resistance : Virulence Product : Accessory colonization factor AcfD Function : - COG functional category : - COG ID : - EC number : - Position : 3229811 - 3234241 bp Length : 4431 bp Strand : - Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+. DNA sequence : TTGCCGGAAGTGAAACCTGATCCAACACCAAACCCGGAGCCGACGCCTGAGCCAACGCCGGACCCAGAACCTACGCCGGA ACCGACACCTGATCCTGAGCCAACACCAGAACCGGAGCCAGAACCTGTTCCTACGAAAACGGGTTATCTGACTCTGGGCG GAAGCCTGCGGGTAACTGGTGATATCACCTGTAATGATGAATCCAGCGATGGCTTTACCTTTACACCAGGCGACAAAGTC ACCTGTGTGGCAGGGAACAACACGACAATTGCTACCTTCGACACCCAGTCAGAAGCTGCGCGTAGCCTGCGTGCGGTTGA AAAAGTGTCGTTTAGTCTTGAGGACGCGCAAGAACTGGCGGGTTCCGACAACAAGAAAAGCAATGCGCTCTCGCTGGTCA CCTCCATGAACAGTTGCCCGGCGAATACAGAACAGGTGTGCCTGGAGTTCTCCTCGGTGATCGAGAGTAAACGTTTCGAC TCGCTGTATAAGCAAATCGATCTGGCACCGGAAGAATTCAAAAAGCTGGTCAATGAAGAGGTGGAAAACAATGCCGCGAC CGATAAAGCGCCATCCACTCATACTTCACCGGTCGTGCCCGCCACCACTCCGGGAACAAAACCGGATCTAAACGCTTCCT TCGTGTCGGCTAACGCGGAACAGTTTTATCAGTATCAACCCACTGAAATCATTCTCTCTGAAGGTCGACTGGTCGATAGT CAGGGGGATGGTGTTGTTGGTGTCAACTATTACACCAATTCCGGCCGTGGTGTAACCGGAGAAAACGGGGAATTTTCCTT TAGTTGGGGGGAAACCATCTCCTTTGGCATCGACACTTTTGAGCTTGGTTCTGTGCGTGGTAACAAGTCGACTATTGCAT TGACTGAACTGGGTGATGAAGTTCGCGGGGCAAATATCGATCAGTTGATTCACCGCTATTCGAAGGCTGGACAAAATCAC ACGCGTGTAGTTCCGGATGAAGTGCGCAAGGTTTTTGCTGAATATCCCAACGTGATTAACGAGATTATCAATCTCTCGTT ATCCAATGGTGCGACGCTGGGGGAAGGTGAGCAAGTCGTTAATCTGCCTAACGAATTTATCGAGCAGTTTAAGACGGGTC AGGCCAAAGAGATCGATACCGCGATTTGTGCGAAAACCGATGGTTGTAACGAGGCTCGCTGGTTCTCGCTGACAACGCGC AATGTTAATGACGGCCAGATTCAGGGCGTTATCAACAAGCTGTGGGGCGTGGATACGAACTACAAATCTGTCAGTAAGTT CCATGTATTCCATGACTCTACCAACTTCTATGGCAGCACGGGTAATGCGCGCGGTCAGGCGGTGGTGAATATCTCCAACG CGGCCTTCCCGATTCTGATGGCGCGTAATGATAAAAACTACTGGCTGGCGTTTGGCGAAAAACGCGCCTGGGATAAAAAT GAGCTGGCGTACATTACTGAAGCGCCTTCCATTGTGCGACCAGAGAACGTGACACGCGAAACCGCCACCTTCAACCTGCC GTTTATCTCGCTGGGGCAAGTGGGCGATGGCAAGCTGATGGTTATCGGTAACCCACACTACAACAGCATCCTGCGTTGCC CGAACGGCTACAGCTGGAACGGGGGCGTTAATAAAGACGGACAGTGTACGCTCAACAGCGACCCGGATGACATGAAGAAC TTCATGGAGAACGTGCTGCGCTATCTGTCAAATGATCGCTGGTTGCCGGATGCAAAATCCAGTATGACCGTGGGTACTAA CCTGGACACGGTATATTTCAAAAAACATGGTCAGGTGCTGGGAAATAGCGCACCGTTTGCGTTCCACAAGGATTTCACTG GCATCACGGTCAAACCAATGACCAGCTATGGCAATCTGAATCCAGATGAAGTTCCTCTGTTGATCCTCAATGGCTTTGAA TACGTCACACAATGGGGTAGCGATCCTTACTCCATTCCTCTGCGCGCAGATACCAGCAAACCGAAGCTGACCCAGCAGGA TGTGACCGATTTGATCGCCTATATGAACAAAGGTGGATCGGTGCTGATCATGGAAAACGTGATGAGCAATCTTAAGGAAG AGAGCGCATCTGGCTTTGTACGTCTGCTTGATGCCGCAGGTTTGTCGATGGCGCTTAACAAGTCGGTAGTAAATAACGAT CCGCAAGGCTACCCTGACCGTGTTCGTCAACGACGTTCAACGCCAATTTGGGTCTATGAGCGTTATCCGGCTGTCGATGG TAAACCACCGTATACCATTGATGACACCACGAAAGAAGTTATCTGGAAATATCAGCAAGAAAACAAACCTGATGACAAAC CGAAGCTGGAAGTTGCCAGCTGGCAGGAAGAAGTTGAGGGTAAACAGGTAACCCAATTCGCCTTTATTGATGAAGCCGAC CACAAAACGCCTGAGTCACTGGCTGCGGCAAAACAGAGAATTCTGGACGCGTTCCCAGGGCTGGAAGTGTGTAAGGATTC TGACTATCACTATGAGGTCAACTGTCTGGAATACCGCCCAGGCACGGGTGTGCCGGTAACCGGTGGCATGTATGTTCCGC AGTATACGCAGCTGGATCTTGGAGCTGACACTGCGAAAGCGATGCTGCAGGCTGCGGATTTAGGCACCAATATTCAGCGC CTGTATCAGCATGAGCTTTATTTCCGTACCAATGGCCGCCAGGGTGAGCGTCTCAACAGCGTCGATCTGGAACGTTTATA CCAAAACATGTCCGTCTGGCTGTGGAACGAGACGAAATATCGTTATGAAGAGGGTAAAGAAGACGAGCTGGGCTTTAAAA CGTTCACTGAGTTTCTGAACTGCTACACCAACAATGCATACGTTGGCACGCAGTGTTCCGCTGAGCTGAAAAAATCGCTG ATCGATAACAAGATGATTTACGGTGAAGAAAGCAGCAAAGCGGGCATGATGAACCCGAGCTACCCGCTCAACTATATGGA AAAACCGCTGACACGCCTGATGCTGGGCCGTTCCTGGTGGGATCTGAACATCAAAGTTGATGTTGAGAAGTATCCGGGAG CAGTATCGGAAGAGGGACAGAACGTTACTGAAACCATCAGCCTGTACTCGAATCCGACCAAATGGTTTGCAGGTAACATG CAGTCAACTGGCCTGTGGGCACCGGCTCAGAAAGAGGTCACCATTAAGTCCAATGCGAACGTTCCTGTGACCGTCACCGT GGCGCTGGCTGACGACCTGACCGGAAGAGAGAAGCATGAAGTCGCGCTGAACCGTCCGCCAAGAGTAACCAAAACGTACT CTCTGGACGCTAGTGGTACGGTGAAATTCAAGGTGCCTTACGGTGGTCTGATTTATATCAAAGGCGACAGCAAAGACAAT GAATCTGCCAGCTTCACCTTTACTGGTGTGGTAAAAGCACCGTTCTATAAAGACGGCGCATGGAAAAACGATCTGAACTC ACCGGCTCCGCTGGGTGAGCTGGAATCAGACGCTTTCGTTTATACCGCACCGAAGAAGAACCTGAATGCCAGCAATTACA CTGGCGGACTGAAGCAATTCGCTAACGATCTGGATACCTTTGCCAGCTCGATGAATGATTTCTACGGTCGTAATGAGGAA GACGGTAAGCACCGGATGTTTACCTATAAAAACTTGACGGGCCACAAGCATCGTTTCGCCAACGATGTGCAGATCTCCAT CGGTGATGCGCATTCGGGTTATCCGGTAATGAACAGCAGCTTCTCGACGAACAGCACCACGCTGCCGACGACGCCGCTGA ACGACTGGCTGATCTGGCACGAAGTAGGGCACAACGCCGCAGAAACGCCGCTGACTGTTCCAGGCGCGACCGAAGTGGCG AACAACGTGCTGGCGCTGTACATGCAGGATCGTTATCTCGGCAAGATGAACCGTGTCGCTGACGATATTACCGTCGCACC GGAATATCTGGAGGAGAGCAACGGTCAGGCATGGGCGCGCGGCGGTGCGGGTGACCGTCTGCTGATGTACGCGCAGCTGA AGGAATGGGCAGAGAAAAACTTTGATATCAAGAAATGGTATCCAGAAGGTGAATTGCCGAAGTTCTTCAGCGATCGTGAA GGGATGAAAGGCTGGAACCTGTTCCAGTTGATGCACCGTAAAGCGCGCGGCGATGACGTTGGTGACAAGACCTTTGGTGG CAAGAATTACTGTGCTGAATCCAACGGTAACGCTGCGGACACGCTGATGCTGTGTGCCTCCTGGGTCGCCCAGACGGATC TTTCGGAGTTCTTTAAGAAATGGAATCCGGGTGCGAATGCTTACCAGCTGCCGGGGGCGAGCGAGATGAGCTTCGAGGGC GGTGTGAGCCAGTCGGCGTACAACACGCTGGCGTCACTCAAGCTGCCGAAACCGGAACAGGGACCGGAAACCATTAACAA GGTTACCGAGCATAAGATGTCTGTCGAGTAA Protein sequence : MPEVKPDPTPNPEPTPEPTPDPEPTPEPTPDPEPTPEPEPEPVPTKTGYLTLGGSLRVTGDITCNDESSDGFTFTPGDKV TCVAGNNTTIATFDTQSEAARSLRAVEKVSFSLEDAQELAGSDNKKSNALSLVTSMNSCPANTEQVCLEFSSVIESKRFD SLYKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPVVPATTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDS QGDGVVGVNYYTNSGRGVTGENGEFSFSWGETISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSKAGQNH TRVVPDEVRKVFAEYPNVINEIINLSLSNGATLGEGEQVVNLPNEFIEQFKTGQAKEIDTAICAKTDGCNEARWFSLTTR NVNDGQIQGVINKLWGVDTNYKSVSKFHVFHDSTNFYGSTGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKN ELAYITEAPSIVRPENVTRETATFNLPFISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKN FMENVLRYLSNDRWLPDAKSSMTVGTNLDTVYFKKHGQVLGNSAPFAFHKDFTGITVKPMTSYGNLNPDEVPLLILNGFE YVTQWGSDPYSIPLRADTSKPKLTQQDVTDLIAYMNKGGSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNND PQGYPDRVRQRRSTPIWVYERYPAVDGKPPYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEGKQVTQFAFIDEAD HKTPESLAAAKQRILDAFPGLEVCKDSDYHYEVNCLEYRPGTGVPVTGGMYVPQYTQLDLGADTAKAMLQAADLGTNIQR LYQHELYFRTNGRQGERLNSVDLERLYQNMSVWLWNETKYRYEEGKEDELGFKTFTEFLNCYTNNAYVGTQCSAELKKSL IDNKMIYGEESSKAGMMNPSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGAVSEEGQNVTETISLYSNPTKWFAGNM QSTGLWAPAQKEVTIKSNANVPVTVTVALADDLTGREKHEVALNRPPRVTKTYSLDASGTVKFKVPYGGLIYIKGDSKDN ESASFTFTGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVYTAPKKNLNASNYTGGLKQFANDLDTFASSMNDFYGRNEE DGKHRMFTYKNLTGHKHRFANDVQISIGDAHSGYPVMNSSFSTNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATEVA NNVLALYMQDRYLGKMNRVADDITVAPEYLEESNGQAWARGGAGDRLLMYAQLKEWAEKNFDIKKWYPEGELPKFFSDRE GMKGWNLFQLMHRKARGDDVGDKTFGGKNYCAESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEG GVSQSAYNTLASLKLPKPEQGPETINKVTEHKMSVE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAE85238.1 | hypothetical protein | Not tested | PAI V 536 | Protein | 0.0 | 88 |
| VC0395_A0370 | YP_001216326.1 | lipoprotein | Not tested | VPI-1 | Protein | 0.0 | 49 |
| acfD | AAK20802.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 49 |
| VC0845 | NP_230493.1 | hypothetical protein | Not tested | VPI-1 | Protein | 0.0 | 49 |
| acfD | ACK75670.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 49 |
| acfD | ACK75646.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 49 |
| acfD | ACK75664.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 49 |
| acfD | ACK75661.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 49 |
| acfD | ACK75658.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 49 |
| acfD | ACK75667.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 49 |
| acfD | ACK75655.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 48 |
| acfD | ACK75652.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 48 |
| acfD | ACK75649.1 | accessory colonization factor AcfD | Virulence | VPI | Protein | 0.0 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LY180_15365 | YP_008566137.1 | Accessory colonization factor AcfD | VFG0106 | Protein | 0.0 | 49 |
