Gene Information

Name : LY180_15300 (LY180_15300)
Accession : YP_008566124.1
Strain : Escherichia coli LY180
Genome accession: NC_022364
Putative virulence/resistance : Virulence
Product : general secretion pathway protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3217899 - 3218435 bp
Length : 537 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGCGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGGCACA
ACACCTGGCGGGGCTTTCTCCGCGTGAAAAGGGCATGTTACTGGCAGCGGTGGTGTTCCTGTTTAGCGTCGGATATTACG
TCCTCATCTGGCAGCCGTTGAGCGAACGGATAGTACAACAGGAGACAATATTGCAGCAACTGGTGGCGATGAACACCAGA
CTGAGGAGCGCCGCGCCGGATATTATTGCGGCGCGAAAATCCGCCACAACAACGCCTGCGCAGGTATCGTGGGTTATCAG
TGACAGTGCTTCCGCGCACTCGGTAGTCATCAAGCGGATAGCCGAGCGTGGGGAGAATATTCAGGTCTGGATAGATCCGG
TGGTGTTTAATGACCTGCTGAACTGGTTAAACGCGCTGGATGAAAAGTATGCGCTGCGGGTGACACAAATTGATGCCAGT
GCTGCTGAGAAGACTGGGATGGTGAATGTGCAGCGGCTGGAGTTTGGACGGGGGTAA

Protein sequence : 
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGLSPREKGMLLAAVVFLFSVGYYVLIWQPLSERIVQQETILQQLVAMNTR
LRSAAPDIIAARKSATTTPAQVSWVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
AAEKTGMVNVQRLEFGRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
yghD CAI43907.1 putative secretion pathway protein Not tested LEE Protein 9e-76 95
gspM CAE85225.1 GspM, hypothetical type II secretion protein Not tested PAI V 536 Protein 8e-75 94
gspM YP_854398.1 general secretion pathway protein YghD Not tested PAI I APEC-O1 Protein 2e-74 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LY180_15300 YP_008566124.1 general secretion pathway protein VFG2056 Protein 7e-55 91