Gene Information

Name : gabD (LY180_13480)
Accession : YP_008565772.1
Strain : Escherichia coli LY180
Genome accession: NC_022364
Putative virulence/resistance : Unknown
Product : succinate-semialdehyde dehdyrogenase
Function : -
COG functional category : -
COG ID : -
EC number : 1.2.1.16
Position : 2841428 - 2842876 bp
Length : 1449 bp
Strand : +
Note : catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence :
ATGAAACTTAACGACAGTAACTTATTCCGCCAGCAGGCGTTGATTAACGGGGAATGGCTGGACGCCAACAATGGCGAGGT
CATCGACGTCACCAATCCGGCGAACGGCGACAAGCTGGGTAGCGTACCCAAAATGGGCGCTGATGAAACCCGCGCCGCTA
TCGACGCCGCCAACCGCGCTCTGCCCGCCTGGCGTGCGCTCACCGCCAAAGAACGCGCCAACATTCTGCGCAACTGGTTC
AATTTGATGATGGAGCATCAGGACGATTTAGCGCGTCTGATGACCCTCGAACAGGGTAAACCGCTGGCTGAAGCGAAAGG
TGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCTGAAGAAGGCAAACGCATTTATGGCGACACCATTCCCGGTC
ATCAGGCCGATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTTACCGCCGCCATCACGCCGTGGAACTTCCCGGCG
GCGATGATTACCCGTAAAGCCGGTCCGGCGCTGGCGGCAGGCTGCACGATGGTGCTGAAACCCGCCAGTCAGACGCCGTT
CTCTGCGCTGGCGCTGGCGGAGCTGGCGATTCGCGCGGGCATTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGG
GCGCAGTCGGTAACGAACTGACCAGCAACCCGCTGGTGCGCAAACTGTCGTTTACCGGTTCGACCGAAATTGGCCGCCAG
TTAATGGAACAATGCGCGAAAGACATCAAAAAAGTGTCGCTGGAGCTCGGCGGCAACGCGCCGTTTATCGTCTTTGACGA
TGCCGACCTCGACAAAGCCGTGGAAGGCGCGCTGGCCTCGAAATTCCGCAACGCCGGGCAAACCTGCGTCTGCGCCAACC
GTTTATACGTGCAGGACGGCGTGTATGACCGCTTTGCCGAAAAATTGCAGCAGGCGGTGAGCAAACTGCACATCGGCGAC
GGGCTGGATAAAGGCGTCACCATCGGGCCGCTGATCGATGAAAAAGCAGTAGCAAAAGTGGAAGAGCATATTGCCGATGC
GCTGGAGAAAGGCGCGCGCGTGGTTTGCGGCGGTAAAGCACACGAACGTGGCGGCAACTTCTTCCAGCCGACCATTCTGG
TGGACGTTCCGGCCAACGCTAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCTGTTCCGTTTTAAAGATGAA
GCCGATGTGATCGCGCAAGCCAATGACACCGAATTTGGTCTTGCCGCCTATTTCTACGCCCGTGATTTAAGCCGCGTCTT
CCGCGTGGGCGAAGCGCTGGAGTACGGCATCGTCGGCATCAATACCGGGATTATTTCCAATGAAGTGGCCCCGTTCGGCG
GCATCAAAGCCTCGGGTCTGGGTCGTGAAGGTTCGAAGTATGGCATCGAAGATTACTTAGAAATCAAATATATGTGCATC
GGTCTTTAA

Protein sequence :
MKLNDSNLFRQQALINGEWLDANNGEVIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERANILRNWF
NLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPA
AMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGIPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQ
LMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGD
GLDKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDE
ADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCI
GL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 AAO17183.1 Orf17 Not tested tcd island Protein 2e-158 67