|
Name : LY180_12100 (LY180_12100) Accession : YP_008565508.1 Strain : Escherichia coli LY180 Genome accession: NC_022364 Putative virulence/resistance : Virulence Product : fimbrial protein StfD Function : - COG functional category : - COG ID : - EC number : - Position : 2543104 - 2543856 bp Length : 753 bp Strand : - Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGTCTGATTTACTTTGCTCTGCCAAATTGGGTGCTACGACGCTAGCGTTACTGCTTAGCGCTGCCAGTTTGTCTGCCCA GGCTTCTGTAACGCCAGATCGTACCCGTTTGATATTTAATGAAAGCGACAAATCAATCAGCGTGACGTTGCGCAATAACG ATCCGAAACTGCCTTATCTGGCCCAAAGCTGGATCGAAGATGAAAAGGGTAACAAGATCAGTTCACCGTTAACTGTTCTG CCACCGGTGCAACGCATCGATTCAATGATGAACGGGCAGGTAAAAGTGCAGGGAATGCCGGATATCAACAAATTGCCTGC CGATCGTGAAAGCCTGTTCTACTTCAACGTGCGTGAGATCCCGCCAAAATCAAACAAAGCCAACACGCTGCAAATAGCAC TACAAACGCGTATTAAGTTGTTCTGGCGACCGAAGGCGCTGGAGAACGTCAGCATGAAAAACCCCTGGCAATATAAGGTT ACTTTAACCCGCAACGGTCAGGAATTTACCGTCAATAACCCGACACCGTATTACGTCATTTTCAGTAATGCCAGCACACA GAAAAATGGCAATCCGGCAGCCGGTTTCTCGCCAATAGTGATGTCGCCGAAAACCTCTGCACCGCTGAATGTGAAGATGG GTAGCGTGCCGGTACTGACCTATGTCAACGACTATGGCGCTCGGATGCCGCTCTTTTTCACTTGCAACGGTAACAGTTGC CAGGTCGATGAAGAGCAGAGCCGCAAAGGCTGA Protein sequence : MSDLLCSAKLGATTLALLLSAASLSAQASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKISSPLTVL PPVQRIDSMMNGQVKVQGMPDINKLPADRESLFYFNVREIPPKSNKANTLQIALQTRIKLFWRPKALENVSMKNPWQYKV TLTRNGQEFTVNNPTPYYVIFSNASTQKNGNPAAGFSPIVMSPKTSAPLNVKMGSVPVLTYVNDYGARMPLFFTCNGNSC QVDEEQSRKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfD | CAD42028.1 | PrfD protein | Virulence | PAI II 536 | Protein | 1e-47 | 45 |
| papD | AAL67413.1 | PapD | Virulence | PAI II CFT073 | Protein | 3e-47 | 45 |
| papD | AAZ04423.1 | P pilus chaperone | Virulence | PAI I APEC-O1 | Protein | 3e-47 | 45 |
| papD_2 | NP_757033.1 | PapD protein | Virulence | PAI II CFT073 | Protein | 4e-47 | 45 |
| papD | YP_002414014.1 | Chaperone protein PapD | Not tested | Not named | Protein | 4e-47 | 45 |
| papD | YP_854253.1 | pilus assembly protein chaperone PapD | Virulence | PAI I APEC-O1 | Protein | 4e-47 | 45 |
| papD | NP_755464.1 | PapD protein | Virulence | PAI I CFT073 | Protein | 1e-42 | 44 |
| pixD | CAE85158.1 | PixD protein | Not tested | PAI V 536 | Protein | 2e-47 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LY180_12100 | YP_008565508.1 | fimbrial protein StfD | VFG1547 | Protein | 7e-48 | 45 |
| LY180_12100 | YP_008565508.1 | fimbrial protein StfD | VFG0896 | Protein | 2e-47 | 45 |
| LY180_12100 | YP_008565508.1 | fimbrial protein StfD | VFG0885 | Protein | 6e-43 | 44 |
