Gene Information

Name : SCD_n00472 (SCD_n00472)
Accession : YP_008545352.1
Strain : Sulfuricella denitrificans skB26
Genome accession: NC_022357
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 500494 - 501156 bp
Length : 663 bp
Strand : -
Note : K07666

DNA sequence : 
ATGAGAGTTCTGCTGGTCGAGGATGACACCTTGCTCGGTGACGGCATCCAGAAAAGCCTCGGCCATCTGGGTTTCACCGT
TGACTGGCTGCGCGATGGACGGCAAGCCGTGCATGCGCTGGCGAGCGAGACTTACGCCGCGGTCGTGCTTGACCTCGGAT
TGCCGCAGCTCGACGGTCTTACCGTGCTGCGTTCGGCGCGAGAAACCGGATTGCAGACCCCCGTCCTGATCCTGACCGCC
CGCGACGAAAAATCGGACAAGCTCAAGGGATTCAGCCTGGGCGCGGACGATTACGTGGTCAAGCCGGTCGACATGGAAGA
ACTGGCGGCGCGGCTGCACGCACTGATCCGGCGTTCCGGCGGCCACGCCACGGCACGCCTGGGCATCGGCGCCATCGAGA
TCGACCCCGCGGCGCACCAGGCATGGCGCGAGGGTCAGCCGGTCGAACTCTCAGCCAGAGAGTTCGCCATTCTCGAGCTA
CTGATGCGAAACGCCGGCCGCGTCCTCACCCGTATGCAACTCGAAGAGAGCCTTTACGGCTGGGGCGACAGCGTCGAAAG
CAACACCATCGAGGTATTCATCCACCATCTGCGCAAAAAACTGGGCGCCGATTTCATCCGCACCCTGCGCGGCATCGGCT
ATAGCGTGGAGCGGCAGGCATGA

Protein sequence : 
MRVLLVEDDTLLGDGIQKSLGHLGFTVDWLRDGRQAVHALASETYAAVVLDLGLPQLDGLTVLRSARETGLQTPVLILTA
RDEKSDKLKGFSLGADDYVVKPVDMEELAARLHALIRRSGGHATARLGIGAIEIDPAAHQAWREGQPVELSAREFAILEL
LMRNAGRVLTRMQLEESLYGWGDSVESNTIEVFIHHLRKKLGADFIRTLRGIGYSVERQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-40 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n00472 YP_008545352.1 winged helix family two component transcriptional regulator BAC0487 Protein 3e-37 45
SCD_n00472 YP_008545352.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 9e-33 44
SCD_n00472 YP_008545352.1 winged helix family two component transcriptional regulator BAC0083 Protein 3e-34 42
SCD_n00472 YP_008545352.1 winged helix family two component transcriptional regulator BAC0197 Protein 5e-34 42
SCD_n00472 YP_008545352.1 winged helix family two component transcriptional regulator CP000647.1.gene1136. Protein 3e-31 41
SCD_n00472 YP_008545352.1 winged helix family two component transcriptional regulator BAC0530 Protein 2e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n00472 YP_008545352.1 winged helix family two component transcriptional regulator VFG0473 Protein 3e-42 45