Gene Information

Name : SCD_n00409 (SCD_n00409)
Accession : YP_008545290.1
Strain : Sulfuricella denitrificans skB26
Genome accession: NC_022357
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 429894 - 430592 bp
Length : 699 bp
Strand : +
Note : K05685

DNA sequence : 
ATGAGCGCCGCCCAGATCGAACTGAGCGGCATCGAGCGCGTGTTCCGGCTCGGCGACAGCGAAGTGCATGCTTTGCGCCA
CCTCGATGTGGCCATTGCGCCCGGCGAATACGTCGCGGTAATGGGTCCGTCCGGCTCGGGCAAGTCGACGCTGCTCAACC
TGCTCGGCCTGCTCGACCGGCCCGATGCCGGCGTCTACCGTCTTGAAGGGAGAGACGTGACCACCCTCTCACCGGAAGAG
CAGGCGCGGGTGCGCAGCGAACGAATCGGTTTCGTGTTCCAGAGCTTTCACCTGGTGCCGCGGCTGACGGCAGCCGAGAA
TATCGCGCTGCCGATGATGCTGGCCGGCATTCCGCCCAGGGAGCGCGCCGACCGGGTGGCTTGCGCACTCAAGGACTATG
GCCTGGAGAACCGCGCCGGCCACCGTCCGGATCAGCTGTCGGGTGGTCAACGCCAGCGCGTCGCCATCGCCCGCGCCACC
ATCATGCGGCCGACCGTGATACTGGCTGACGAACCCACCGGCAACCTCGACCGCGCCACCGGCGAAGAAGTGATCCGCCT
GCTCGAACAACTCAATGGCAGCGGAGTGACGGTTATCATCGTCACCCACGATCCCGTCCTCGGCGGCCACGCCCGGCGTC
AGTTGCTGATGGAGGATGGCGCGCTACGGCATGACAGCGCGCGGGAGGGCGCGGCGTAA

Protein sequence : 
MSAAQIELSGIERVFRLGDSEVHALRHLDVAIAPGEYVAVMGPSGSGKSTLLNLLGLLDRPDAGVYRLEGRDVTTLSPEE
QARVRSERIGFVFQSFHLVPRLTAAENIALPMMLAGIPPRERADRVACALKDYGLENRAGHRPDQLSGGQRQRVAIARAT
IMRPTVILADEPTGNLDRATGEEVIRLLEQLNGSGVTVIIVTHDPVLGGHARRQLLMEDGALRHDSAREGAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-27 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n00409 YP_008545290.1 ABC transporter NC_008702.1.4606598. Protein 1e-74 77
SCD_n00409 YP_008545290.1 ABC transporter NC_012469.1.7686878. Protein 2e-44 48
SCD_n00409 YP_008545290.1 ABC transporter CP001581.1.gene598.p Protein 4e-24 43
SCD_n00409 YP_008545290.1 ABC transporter CP001581.1.gene798.p Protein 9e-28 41