Gene Information

Name : SCD_n02873 (SCD_n02873)
Accession : YP_008547704.1
Strain : Sulfuricella denitrificans skB26
Genome accession: NC_022357
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2930179 - 2932011 bp
Length : 1833 bp
Strand : -
Note : -

DNA sequence : 
ATGCTGAAAGTAAAAAACAAGCTGTTGTTAGTGGTCGGCCATGATGTGGCGGCAACATTTCTGGCGTGGGTGCTGGCTTA
TTGGCTTCGGTTCAACTTCGCCATTTCCGAGCCCTACATGCAATCGATGTGGAATACGCTGGTCTGGGTTGTTCCGCTGC
AGACATTCATTTTTTGGCGCTTTGGCCTGTATCGCGGGGTGTGGCGCTTTGCCAGCCTACCGGATTTGAAGCGGATTATT
ATGGCGGTGGGCGTGGCTGGGTTGAGTGTACCAGTGGTGCTGTATATGGTGCATGTTCCGGTTGCAGTACCGCGCTCGGT
GCTGGTGCTGGACCCATTACTACTGGTGATGGTCGTGGGAGGTAGCCGTTTTGTCTATCGGTCATGGAAGGAGCATCACC
TGTACCGGTTTGCCGATGCAGAGCGACAGCCTGTTTTGGTTTTAGGGGCAGGAGAGATTGCCGCAGGGTTGGTAAAAGAA
TTGTCTCGCAGCAAAGAATGGCGGGTGGAGGGGTTGCTGGATGATGATCCCGCAATGGTTGGTCGATTGATTCAGGGGGT
CAAGGTACTGGGCCGAGTGGACGAGTTGCCGAAATGGGCGGGGCGATATGATGTCCATGTTGCGATCATTGCCATGCCTT
CGGCTTCCCACCAGGCGCGCCGCCGTGCCGTAAAGCTTTGCAGTTCGGCAAATGTGAAGTCGATGACGGTGCCGGCCTTC
GACGATCTTGCTAGCGGCAGGGTGACGGTGTCGCAGATTCGGCAGGTTGAGCTTGACGACTTGTTGGGCAGGGATCCAGT
GACACTCGACGAAGAGGGTTTGCATGGATTGCTGACAGGCCAACCTGTCATGGTGACAGGGGCGGGTGGGTCGATCGGTT
CCGAGCTGTGTCGCCAGATCGCGCGTTTCGAGCCGGCATGTCTAGTGTTGTTCGAGTTAAATGAATTCGTTTTGTATCGT
ATGGAGCAGGAATTTGCGGAAAAACTCCCCCAATTGCGCATAGTATGCGCAATTGGTGACGTGAAGGATGAGGCACGCCT
GGATCAAGTCATGTGCCAATACGCCCCCGCCGCAATTTTTCATGCTGCTGCATACAAGCACGTGCCGCTAATGGAGCAGG
AAAATGCTTGGCAGGCTGTGCTCAACAATGTACTTGGCACCTGCACTGTGGCGCGTGCCGCGATGCGGCATGGGGTGAAG
AAATTTGTTTTGATCTCGACTGACAAGGCGGTGAATCCGACCAATGTAATGGGTGCAACCAAGCGATTAGCCGAGATGGT
TTGCCAAGGGTTGCAACAGGAGGGGGGCACTCGCTTTGTCATGGTGCGTTTCGGTAATGTTCTGGGCAGCACGGGTAGTG
TGATTCCAAAATTCCAGGAACAGATTGTGCATGGCGGGCCCATTACCGTTACCCATCCGGAAATCACGCGCTATTTCATG
TCTATTCCTGAGGCTGCTCAGCTGGTGCTTCAGGCTGGATTGATGGGGGAGGGTGGCGAGATTTTTGTGCTGGATATGGG
TGAGCCGGTCAGGATTGTGGAATTGGCTAAGGATATGATCCGGCTATCCGGTTTTTCGGAGGGTGATATTCCCATTGTAT
TCACCGGCCTGCGGCCAGGGGAAAAGCTTTATGAAGAATTGCTGGCCGATGATGAGCATACGTTGCCGACACCTCACCCC
AAGCTGCGTATCGCCCAAGCGCGCACGGCAGACGGTGTTTGGCTCGATGCGCTGTTACAGTGGACGGGAAGCGGGGAAAT
GCTATCGGAACAGGAAGTTAAACAGGGACTGAAGAAGTGGGTTCCGGAGTACTGCAGTAGCAAAAATTCATGA

Protein sequence : 
MLKVKNKLLLVVGHDVAATFLAWVLAYWLRFNFAISEPYMQSMWNTLVWVVPLQTFIFWRFGLYRGVWRFASLPDLKRII
MAVGVAGLSVPVVLYMVHVPVAVPRSVLVLDPLLLVMVVGGSRFVYRSWKEHHLYRFADAERQPVLVLGAGEIAAGLVKE
LSRSKEWRVEGLLDDDPAMVGRLIQGVKVLGRVDELPKWAGRYDVHVAIIAMPSASHQARRRAVKLCSSANVKSMTVPAF
DDLASGRVTVSQIRQVELDDLLGRDPVTLDEEGLHGLLTGQPVMVTGAGGSIGSELCRQIARFEPACLVLFELNEFVLYR
MEQEFAEKLPQLRIVCAIGDVKDEARLDQVMCQYAPAAIFHAAAYKHVPLMEQENAWQAVLNNVLGTCTVARAAMRHGVK
KFVLISTDKAVNPTNVMGATKRLAEMVCQGLQQEGGTRFVMVRFGNVLGSTGSVIPKFQEQIVHGGPITVTHPEITRYFM
SIPEAAQLVLQAGLMGEGGEIFVLDMGEPVRIVELAKDMIRLSGFSEGDIPIVFTGLRPGEKLYEELLADDEHTLPTPHP
KLRIAQARTADGVWLDALLQWTGSGEMLSEQEVKQGLKKWVPEYCSSKNS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 2e-83 45
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-87 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n02873 YP_008547704.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 1e-79 44
SCD_n02873 YP_008547704.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 6e-88 43