Gene Information

Name : SCD_n02101 (SCD_n02101)
Accession : YP_008546944.1
Strain : Sulfuricella denitrificans skB26
Genome accession: NC_022357
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, Fis family transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2146862 - 2148241 bp
Length : 1380 bp
Strand : -
Note : K02667

DNA sequence : 
TTGAACCGGACACTGCCAGTTTCTCGGAATAACGAAGAGCAACCGCGCCGTGTGCTGGTTGTGGATGACGAAGCCGACAT
CCGCGAACTGCTGGTAATGACGTTGCAGCGCATGGGCTTGGATGTCGATGCGGCGGCTAGCACGTTCGAAGCGGAGCAGT
ACCTGCACAAGAATTACTATAATCTTTGTCTTACCGACATGCGTTTGCCAGACGGGGATGGCCTTGGTTTTCTGGAATAT
GTGACCAAAAATTACCCCGGCAAACCGGTGGCGGTGATCACCGCCTACGGCAGCGCTGAAAATGCGGTCGCCGCCCTAAA
GGCGGGCGCATTCGATTACCTTTCCAAGCCGGTTTCCCTGGCCCAGTTGCGTGCGCTGGTCAATTCCGCGCTCAAATTGC
CCAGCTCAAGTCAGTCAAGAAAAATAGAAGAAAACCAGACTGCTGTCGGCCAGCCGGTATTGCTGGGTAATTCCCCCCTG
ATGCTGCAGACCCGCCAGATGATAGCCAAGCTGGCGCGCAGCCAGGCGCCGATTCATATTTCCGGGGAATCGGGTAGCGG
CAAGGAACTGGCGGCACGGTTGCTCCATCTTGATGGCCCGCGTGGCGATGCGCCCTTCGTCGCAGTCAATTGCGGGGCGA
TTCCCGAAAACCTGATGGAAAGCGAGTTTTTCGGTTACAAGAAAGGCGCCTTCACCGGGGCCAATCAGGACAAGGAGGGT
TTTTTTCAGGCTGCAGCCGGCGGAACACTGTTTCTGGATGAAGTGGCGGACCTGCCCTTGCCGATGCAGGTGAAGCTGTT
GCGCGTCATCCAGGAAAAAATGGTGCGCAAGGTGGGTGCCACCCAGGAAGAACCCGTGGATGTGCGCATCATAAGTGCCA
CTCACCAGGATCTGACGCTATGCGTGGAAAGTGGAAAATTTCGCCAGGACTTGTTTTACCGGCTCAACGTGATCGTGTTG
AAGATGCCGGCTTTGCGCGAGATCCCTGACGATATCCCGCTGCTGGCCGGGGAGATGCTCAAGAAAATGGCGGGTCTGAA
CACCGAGCCGCCGAAATTGAGCCTGGCAGCGTTGAAGGATCTGCAAGAGTACGATTTCCCCGGCAATGTACGCGAAATGG
AAAACATCCTCGAGCGGGCGATGGCGCTAACTACGGGTGGTGAGATATGTCCCGAGGATTTGCAACTCGCGGCGAAGCAG
CCAAAGGACATGGCACAGATGAAAAGCTTGCCGTTACAGGAATATCTCGACGCCGTGGAAAAAGAGGCGATTCTGGAAGC
GCTGGAAAAAACCCGTTTCAACAAGACCGCGGCAGCCAAGCTGCTTGGCATCACCTTTCGGGCGTTGCGTTACCGACTGG
AACGACTGGGGATGGATTAG

Protein sequence : 
MNRTLPVSRNNEEQPRRVLVVDDEADIRELLVMTLQRMGLDVDAAASTFEAEQYLHKNYYNLCLTDMRLPDGDGLGFLEY
VTKNYPGKPVAVITAYGSAENAVAALKAGAFDYLSKPVSLAQLRALVNSALKLPSSSQSRKIEENQTAVGQPVLLGNSPL
MLQTRQMIAKLARSQAPIHISGESGSGKELAARLLHLDGPRGDAPFVAVNCGAIPENLMESEFFGYKKGAFTGANQDKEG
FFQAAAGGTLFLDEVADLPLPMQVKLLRVIQEKMVRKVGATQEEPVDVRIISATHQDLTLCVESGKFRQDLFYRLNVIVL
KMPALREIPDDIPLLAGEMLKKMAGLNTEPPKLSLAALKDLQEYDFPGNVREMENILERAMALTTGGEICPEDLQLAAKQ
PKDMAQMKSLPLQEYLDAVEKEAILEALEKTRFNKTAAAKLLGITFRALRYRLERLGMD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-95 47
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-95 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n02101 YP_008546944.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0467 Protein 6e-77 45
SCD_n02101 YP_008546944.1 two component, sigma54 specific, Fis family transcriptional regulator BAC0089 Protein 1e-69 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n02101 YP_008546944.1 two component, sigma54 specific, Fis family transcriptional regulator VFG1214 Protein 5e-121 58