Gene Information

Name : SCD_n01690 (SCD_n01690)
Accession : YP_008546543.1
Strain : Sulfuricella denitrificans skB26
Genome accession: NC_022357
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1710830 - 1711546 bp
Length : 717 bp
Strand : +
Note : K02003

DNA sequence :
ATGAACGGCGACAACACTCCCGCTTCACTCATCGAACTGAGCGCCATCACCAAGACCTACGGCCAGGGGCAGGCTGCCTT
CCAGGCTCTGAGCGGCATCGATCTCACGATCCAGAAAGGGGAATTCGTCGCCATCATGGGGCCAAGCGGGTCGGGCAAGT
CTACCGCGATGAACATCCTCGGCTGCCTCGATATCCCCAGCAGCGGCGCCTATCTATTTCGTGGCGTCCATGTGGAACAG
CTGAGCCGCAATCAGCGCGCGCTGCTGCGCCGCCATTACCTCGGCTTTGTGTTTCAGGGATTCAATCTGCTGGCTCGCAC
CTCGGCTCAGGAGAACGTGGAATTGCCCCTGCTCTATCGCGGTGAAAGCGCAGCCTCACGCCATGCGATGGCACGTGCGG
CGCTGGCATCCGTTGGCTTGAAGGGGTGGGAGCACCATACCCAGGCTGAACTCTCCGGCGGCCAGCAACAGCGCGTTGCC
GTTGCGCGCGCCATCGTCACAAAGCCAACCGTCCTCTTGGCGGATGAGCCCACTGGCAACCTGGACAGCAAAACCAGCCG
CGAAATCATGGAACTGCTGACGGCCCTCAACCGAGATCAGGGCATTACCATCCTGATGGTCACGCATGAGCCGGATATGG
CTCAGTATGCCCATCGTATCGTGCATTTCGTAGACGGCCAGGTGGACAGCGACATTCGCAACGGGGAGCAAGCCTGA

Protein sequence :
MNGDNTPASLIELSAITKTYGQGQAAFQALSGIDLTIQKGEFVAIMGPSGSGKSTAMNILGCLDIPSSGAYLFRGVHVEQ
LSRNQRALLRRHYLGFVFQGFNLLARTSAQENVELPLLYRGESAASRHAMARAALASVGLKGWEHHTQAELSGGQQQRVA
VARAIVTKPTVLLADEPTGNLDSKTSREIMELLTALNRDQGITILMVTHEPDMAQYAHRIVHFVDGQVDSDIRNGEQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-29 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-27 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n01690 YP_008546543.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 4e-48 52
SCD_n01690 YP_008546543.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 4e-41 49
SCD_n01690 YP_008546543.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 2e-38 44
SCD_n01690 YP_008546543.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 1e-38 42