Gene Information

Name : SCD_n01579 (SCD_n01579)
Accession : YP_008546432.1
Strain : Sulfuricella denitrificans skB26
Genome accession: NC_022357
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1592383 - 1593069 bp
Length : 687 bp
Strand : -
Note : K02483

DNA sequence : 
ATGGTTAAGTTGCTGATTATTGAGGACGATGAGGCTGCTGCGGGTTCTTTGAAACGTGGGCTGGTGGAAGCTGGCTACGC
CGTCGAGCTGGCCCATGACGGCGAGCGTGGCTTGCAGCAGGCTCAGGCCGGGGATCACGACCTGTGGGTGATTGATATCA
TGTTGCCCGGACGCGATGGGCTATCGGTTCTGAAGACGCTGCGGGATCAGGGTAGACGTACCCCAGCTCTGATCCTGAGC
GCACTCGGCAAGGTGGACGACCGGGTGGAAGGCTTGCGTGTCGGTGGCGATGATTATGTGGTCAAGCCTTACTCTTTTGA
CGAATTGCTGGCGCGGATCGAGGCGCTGCTGCGACGTGTGCGGAGCTTTGGCAGCGGTCCGGAAACCATGCTGGAACTTG
CTGATCTTAAAATGGACTTGCTCAGTCGCAATGTGACCCGAGGCGGCCAGGAAATCGATCTCCAGCCGCGCGAATTTCGC
CTGCTGGAATACCTGATGCGTCACGCCGGTCAGGTGGTGACGCGCACCATGCTGCTGGAAAATGTCTGGGAATATTTCTT
CGACCCTCAGACCAATGTCGTGGATGTCCACATCAGCCGACTACGTCAGAAAATCGACAAATCCTTTGCCACTCCCCTGC
TGCACACAGTGCGGGGACGCGGCTATATCTTGCGTCCGGAAGCGTAA

Protein sequence : 
MVKLLIIEDDEAAAGSLKRGLVEAGYAVELAHDGERGLQQAQAGDHDLWVIDIMLPGRDGLSVLKTLRDQGRRTPALILS
ALGKVDDRVEGLRVGGDDYVVKPYSFDELLARIEALLRRVRSFGSGPETMLELADLKMDLLSRNVTRGGQEIDLQPREFR
LLEYLMRHAGQVVTRTMLLENVWEYFFDPQTNVVDVHISRLRQKIDKSFATPLLHTVRGRGYILRPEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-36 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-35 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n01579 YP_008546432.1 response regulator BAC0125 Protein 3e-42 47
SCD_n01579 YP_008546432.1 response regulator BAC0111 Protein 1e-44 47
SCD_n01579 YP_008546432.1 response regulator BAC0083 Protein 2e-41 46
SCD_n01579 YP_008546432.1 response regulator BAC0197 Protein 1e-39 46
SCD_n01579 YP_008546432.1 response regulator BAC0347 Protein 5e-40 45
SCD_n01579 YP_008546432.1 response regulator BAC0308 Protein 6e-39 44
SCD_n01579 YP_008546432.1 response regulator BAC0638 Protein 4e-35 44
SCD_n01579 YP_008546432.1 response regulator HE999704.1.gene1528. Protein 4e-27 41
SCD_n01579 YP_008546432.1 response regulator NC_002516.2.879194.p Protein 8e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n01579 YP_008546432.1 response regulator VFG1389 Protein 4e-31 45
SCD_n01579 YP_008546432.1 response regulator VFG0596 Protein 3e-36 43
SCD_n01579 YP_008546432.1 response regulator VFG1390 Protein 1e-34 42