Gene Information

Name : SCD_n01335 (SCD_n01335)
Accession : YP_008546194.1
Strain : Sulfuricella denitrificans skB26
Genome accession: NC_022357
Putative virulence/resistance : Virulence
Product : nucleoside-diphosphate-sugar epimerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1348062 - 1349093 bp
Length : 1032 bp
Strand : +
Note : K02473

DNA sequence : 
ATGACAAAATATCATGAACTCAAACAGCACCTTCAGGGCAATTCGCATGCTTGGCTGATCACTGGCGTAGCCGGGTTTAT
CGGCTCCAATCTGCTGGAAACGCTGCTTAAGCTAGACCAGAAAGTGGTCGGGCTGGACAACTTCTCCACCGGTCACCGCC
ATAACCTGGATCAGGTAGAAGCACGGGTCACCCCGACGCAGTGGCAGAGTTTCCGCCTGATCGAAGGAGATATACGTAAC
CTGGCAGATTGCACTGCGGCATGCTACGGCGTCGATTACGTGTTGCACCAAGCCGCGCTGGGCTCCGTGCCGCGCTCGCT
GGAAGATCCCATCCTGACCAATGAAAACAATATCACGGGGTTTCTCAATATGCTGGTGGCAGCGCGGGATGCGCAGGTGC
AGCGTTTTGTGTATGCGGCATCCAGTTCCACCTACGGCGATCATCCTGGCTTGCCCAAGGTAGAAGACCTGATCGGCAAA
CCGCTTTCCCCCTATGCCGTAACCAAGTACGTCAATGAACTCTATGCAGACGTATTTGCCCGTTGCTATGGTTTCAAAAC
CGTTGGCCTGCGTTACTTCAATATTTTTGGTCAGCGCCAGGATCCGGCAGGGGCCTATGCCGCGGTAATCCCCAAGTGGG
TTGCCAGCATGATCAAAAACGAGTCGGTATTTATCAACGGCGACGGTGAAACCAGTCGCGACTTCTGCTACATCGACAAC
ACCGTGCAGGCCAACCTTCTGGCCGCCACCACCGACAATCCGGACGCAGTGGATCAGGTTTATAACGTGGCGGTAGGTGA
TCGTACCAGCCTGAACCAGTTGTTCGAAGGCATTCGAATCCTGCTCGAACCACGCTTCCCGCACCTGAAAGACTTCAAAC
CCACCTACCGGGACTTCCGTGCCGGCGATGTGCGTCATTCTCTGGCGGATATCAGCAAAGCCCAAAACCTGCTGGGATAT
GCCCCGACACATCGCATCGACGAGGGACTCAAGGAAGCCATGGATTGGTATGTTAGAGATCTGACTGGTTAA

Protein sequence : 
MTKYHELKQHLQGNSHAWLITGVAGFIGSNLLETLLKLDQKVVGLDNFSTGHRHNLDQVEARVTPTQWQSFRLIEGDIRN
LADCTAACYGVDYVLHQAALGSVPRSLEDPILTNENNITGFLNMLVAARDAQVQRFVYAASSSTYGDHPGLPKVEDLIGK
PLSPYAVTKYVNELYADVFARCYGFKTVGLRYFNIFGQRQDPAGAYAAVIPKWVASMIKNESVFINGDGETSRDFCYIDN
TVQANLLAATTDNPDAVDQVYNVAVGDRTSLNQLFEGIRILLEPRFPHLKDFKPTYRDFRAGDVRHSLADISKAQNLLGY
APTHRIDEGLKEAMDWYVRDLTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-106 64
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-106 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCD_n01335 YP_008546194.1 nucleoside-diphosphate-sugar epimerase VFG0430 Protein 9e-107 64