Gene Information

Name : fliP (SCD_n01237)
Accession : YP_008546098.1
Strain : Sulfuricella denitrificans skB26
Genome accession: NC_022357
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1255091 - 1255831 bp
Length : 741 bp
Strand : +
Note : K02419

DNA sequence :
TTGTTTGCCGCCATGTTGCTGGCGCTGGGTGTACTTCTGCCGTTAACTGCCATGGCGGTCAATTCAGGATTGCCTGCTTT
TACCAGCGTGCCAGGGCCAGGTGGTGCCCAGACTTATACCCTTAGTATTCAGACACTGCTATTGATGACAGCGCTGACAT
TTTTGCCAGCGGTGTTGCTAATGATGACGGCGTTTACCCGTATTATCATCGTTCTGTCGCTGTTGCGCATGGCAATCGGC
ACGATGCAGGCACCTCCCAATCAGATTCTGATCGGCCTTTCCCTGTTTTTGACATTTTTCGTCATGGCGCCGGTGTTCGA
TAAGATTTATGCAGAGGCTTATCAGCCTTATGCGGAACAAAAAATCGATTTTAACCAGGCGCTGGAGAAGGGGGCCGCAC
CATTGAAAGCCTTTATGTTGCGGCAGACGCGCCAGGATGATCTGGCGCTGTTTGTCAAACTTTCCAACAGCGCACCTTTG
CCCGGACCGGAAGCGGTGCCGATGAAAATTCTTGTGCCGGCCTATGTGATCAGCGAGCTTAAAACCGCATTCCAGATTGG
TTTTGTGGTGTTTCTACCATTCCTGATTATAGACATGGTGGTGGCCAGCGTATTGATGTCTATGGGTATGATGATGCTGT
CGCCGATGGTGATCTCATTGCCCTTCAAACTGATGCTGTTCGTGCTGGTGGATGGCTGGAATCTGCTTATCGGTTCCCTG
GTGCAGAGTTTCTACACATGA

Protein sequence :
MFAAMLLALGVLLPLTAMAVNSGLPAFTSVPGPGGAQTYTLSIQTLLLMTALTFLPAVLLMMTAFTRIIIVLSLLRMAIG
TMQAPPNQILIGLSLFLTFFVMAPVFDKIYAEAYQPYAEQKIDFNQALEKGAAPLKAFMLRQTRQDDLALFVKLSNSAPL
PGPEAVPMKILVPAYVISELKTAFQIGFVVFLPFLIIDMVVASVLMSMGMMMLSPMVISLPFKLMLFVLVDGWNLLIGSL
VQSFYT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-19 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-19 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-19 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-21 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_008546098.1 flagellar biosynthetic protein FliP VFG2494 Protein 8e-70 70
fliP YP_008546098.1 flagellar biosynthetic protein FliP VFG2338 Protein 8e-67 66
fliP YP_008546098.1 flagellar biosynthetic protein FliP VFG1259 Protein 8e-58 62
fliP YP_008546098.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-56 60
fliP YP_008546098.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-25 41
fliP YP_008546098.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-23 41
fliP YP_008546098.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-21 41