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Name : hcsA (HifGL_000672) Accession : YP_008543805.1 Strain : Haemophilus influenzae KR494 Genome accession: NC_022356 Putative virulence/resistance : Virulence Product : HcsA Function : - COG functional category : - COG ID : - EC number : - Position : 684125 - 686167 bp Length : 2043 bp Strand : + Note : envelope biogenesis DNA sequence : ATGCCAACTGCTCTGATTTTCTCGCACGGAATCAAAAAAATTCCGCATTTAGCCTCATTTTTCCCTAATCAAAAATTGGC TTTCGCGCGCATTTTTTCTGTGCCGAAGGCTGATTCTGTGTTGGGTTGGGGGTTACGTCCTTCCACGAAAAAATCACGTG CATATGCACAAAAGCATAACTTACCGTTTATCGCCTTAGAAGACGGTTTTTTACGTTCGCTAGGCTTGGGCGTTGATGGT TATCCACCACTTTCTATGATCGTGGATAAATTAGGTATTTATTACGACACGACTCGTCCCTCAACATTGGAACAGCTTGT TCTGGCGGGAGAATGTGATGAGGTTTTAGCGGAAAAGGTTCGATCACAGATTATGACGCATCAACTTTCAAAATATAACC AAACATTAGTGGATTATGAGAAAGAAGGTGACGAGCCATTAGTGCTTGTTATCGACCAAACCTTTGGCGATATGGCGGTG AAATATGGTCAAGCCGATGCTGAGCATTTTGCACAGATGTTACAAGCTGCCATTACAGAAAATCCCAAAGCCAAAATTTT AGTGAAAACCCATCCTGATGTATTAAGTGGTAAAAAACAGGGCTATTTTTCGCCAAATGAAAATTATCCAAGCAACGTGC ATTTTTTTAGTGATCCCGTCAATCCGATTTCGCTGATTAAAGCCGTAGAGAAAGTTTATTGTGTTACCTCTCAAATGGGG TTTGAAGCATTACTGGCGGGTAAACCGGTGGTGACGTTTGGCGTACCATGGTTTGCTGGCTGGGGCGTGACGGATGATCG TCATCAGAATGCTAAAGCATTGGCACAAAGTGAGCGTCGTAAAGTGCGGTCAGTTTTACAACTGTTTTATGCGGCATATT TTCAATATACTCGTTATTTGAATCCAAACACCGGCACAGCTGGAACAATTTTTGATGTCATTAACCACATCATTCACACC AAAGCACTTAACTTGTGCTTACAAGGTAATCTCTATTGCGTTGGAATGTCGTTGTGGAAACGTGCGGTTATTAAACCGTT TTTCCGTTTACCAAGCTGCAAGCTACATTTTGTTAAAGATGTGAGTAAACTCAATGGTAAAACATTCACAAAAAATGACC GCTTGTTACTATGGGGAACCGGTAAAGAAGCTGCGCTAAATTATGCTAAAGCGCATAATATTAACATGCTCAGAATGGAA GATGGGTTTATTCGTTCAGTTGGGCTTGGCTCAAACTTGGTTGCGCCACTTTCTTTAGTGTGTGACGATTTAGGTATCTA TTTCAATGCAGAAAGTCCTTCTCGCTTAGAAGAGATTTTGCAGCATCAACAATTTACCGAAGCAGATTTAATCGAAGCCA GTCAACTACAACATGCGTTGGTATCGCAACATATCGGTAAATATAATGTCGGTGAAGGAACATTTTCTTTACCGAATACA GTCAAAAAGAAAATTTTAGTGGTAGGACAGGTCGAAGACGATGCCTCTATTCGAACTGCCTCACCGAATATTCGCACTAA TTTAGATTTATTAAAAACAGTATGCGCCGCAAATCCTCAAGCTTATATCGTTTATAAGCCACACCCGGATGTTGTAAGTG GTAACCGCATTGGTCATATTGCAGAATCGCAAGCGGTCAAATTAGCGGATCAAATTGCAAAAACAGAAAACGTGCTTGAC TGCATCAATGCCGTGGATGAACTACACACCATGACATCTCTTGCAGGTTTTGAAGCCTTGCTAAGAAACAAAACGGTGCA TTGTTATGGTTTGCCATTTTATAGCCACTGGGGATTGACCGTTGATCACTGCTCTTTTAACCGCCGCAATCGAAAACTTT CATTGTTAGAACTTATTTCTGGCACATTGGTCTATTATCCACAATATGTTAATCCGAATACGGGTGAGCTAACCAATGCT CAAACAGCGATTGAAATTTTGAAAGCACAGCGTTTAGCGCTTAATCACAGCGGTATTCATCGCCATTGGCTAGCTAAACA ATATGGCAAATTGCAGCATTTAGTGTGCGCATTGCGTACTTAA Protein sequence : MPTALIFSHGIKKIPHLASFFPNQKLAFARIFSVPKADSVLGWGLRPSTKKSRAYAQKHNLPFIALEDGFLRSLGLGVDG YPPLSMIVDKLGIYYDTTRPSTLEQLVLAGECDEVLAEKVRSQIMTHQLSKYNQTLVDYEKEGDEPLVLVIDQTFGDMAV KYGQADAEHFAQMLQAAITENPKAKILVKTHPDVLSGKKQGYFSPNENYPSNVHFFSDPVNPISLIKAVEKVYCVTSQMG FEALLAGKPVVTFGVPWFAGWGVTDDRHQNAKALAQSERRKVRSVLQLFYAAYFQYTRYLNPNTGTAGTIFDVINHIIHT KALNLCLQGNLYCVGMSLWKRAVIKPFFRLPSCKLHFVKDVSKLNGKTFTKNDRLLLWGTGKEAALNYAKAHNINMLRME DGFIRSVGLGSNLVAPLSLVCDDLGIYFNAESPSRLEEILQHQQFTEADLIEASQLQHALVSQHIGKYNVGEGTFSLPNT VKKKILVVGQVEDDASIRTASPNIRTNLDLLKTVCAANPQAYIVYKPHPDVVSGNRIGHIAESQAVKLADQIAKTENVLD CINAVDELHTMTSLAGFEALLRNKTVHCYGLPFYSHWGLTVDHCSFNRRNRKLSLLELISGTLVYYPQYVNPNTGELTNA QTAIEILKAQRLALNHSGIHRHWLAKQYGKLQHLVCALRT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 0.0 | 58 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 8e-131 | 48 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 6e-131 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hcsA | YP_008543805.1 | HcsA | VFG0704 | Protein | 0.0 | 96 |
| hcsA | YP_008543805.1 | HcsA | VFG0692 | Protein | 0.0 | 95 |
| hcsA | YP_008543805.1 | HcsA | VFG0259 | Protein | 0.0 | 58 |
