|
Name : hsdR3 (N564_01540) Accession : YP_008541144.1 Strain : jejuni jejuni 00-2426 Genome accession: NC_022352 Putative virulence/resistance : Unknown Product : type I restriction enzyme, R subunit Function : - COG functional category : - COG ID : - EC number : 3.1.21.3 Position : 1457937 - 1461032 bp Length : 3096 bp Strand : - Note : - DNA sequence : ATGAGCAAGGCGAAGACTAGTGAGTTTGATTTAGAGCAGTTTGTTATATCATCACTACTTGAGCATGGGTGGTGCTATGA AAAGCCTGTAAGAGCCACTGATGAAGTTTTGCTAGAAACTAGCCTTGTAAATGCACTTTGTAGGCTAAATCCACAGCTTG ATTTATCAAAAGCTAATGAAATTTATAAGGAGCTAAAAAGCAAAAATCATCTTAGCCTTTTAGATAGCAATGAAAACTTT CATTATAAGCTTGTAAATGGGGTAAATATAAACACTACAAAAGACGGCGAAAGCAGAGCTGATATCATAAATCTAATTGA TTTTAATAATGCAAGCAACAATGAATTTATAGCAACAAACCAGCTAAGCATCACAGAAGCTAAAGAAAACAAAATCCCCG ATGTAGTGCTATATATAAATGGAATTCCGCTTGTTTTAATGGAGCTAAAAAGCCCAAGCGATGAAAACGCCACGATAAAC TCAGCTTATAATCAAATAAACACTTATAAACAAACAATCCCAAGTATTTTTACATATAATGCTTTTTGTGTGATAAGCGA TGGGTATTTTGCTAGGGCGGGGAGTATTTCGGCTGATTTTTCAAGGTTTATGGCGTGGAAAAGTAGCGATGGGATAAACT ACGCTCCAAACAAGTCTTTAGAAATTAAAACCTTAATAGATGGTATGCTAAATCCAAAAACCTTGCTAGATATCATTTGC AATTTCATAGTTTTTGAAAAAGAGCAAATAAGAGATTTAAATGGTATTTTAAGTATAAAAACTACCAAAAAAATCGCTTG CTATCATCAATACTACGCAGTAAATAAAGCCATTAGTAGAACAATCACAGCAAGTAGCAAAGACGGAGATAAAAAAGGTG GCGTGGTGTGGCATACGCAAGGTAGTGGGAAGTCTTTGTCTATGGTGTTTTATAGTGCTAAAGCGATAAAGGCTTTAAAT AATCCTACGATTTTGCTTATCACGGATAGAAATGATCTAGATGATCAGCTTTTTGGTACTTTTGCAAGTTGTGCGAACCT TTTAAGACAAGAGCCAAAACAAGCAAACGATAAAGAGCATTTAAAAGAGCTTTTAAGGGTAGCTAGTGGTGGAGTGGTAT TTACTACTATTCAAAAATTTAGTCCAGAAAATGATAATGTATTTGAGTGCTTATCGCTTAGAGATAATATCATCGTAATT GCAGATGAAGCACACAGAACCCAATACGGCTTTGATGCAAAAGTAGTAGAAGAAAAGTCAAAAAGTGGCGATGTGCTAGG GCAAAAGATAGTTTATGGTTTCGCAAAATATCTGCGTGATGCTTTGCCAAATGCTACTTATATAGGATTTACAGGAACGC CAATTGAAAGCCATGATATAAACACCCCTGCAGTTTTTGGAAACTACATAGATATATATGATATATCAAGAGCTGTTGAA GATGGTGCTACTGTGAGTATATATTATGAAAGCAGACTTGCCAAAATAGAGCTAAGCGAAGAAGGAAAAAGGCTTGTAAA TGAATTAGATGAAAAGCTTGAAAACCAAGATAGCCAAAAAGCAAAAGCTACTAAGCTAGAAGCTTTAGTAGGTAGCACAA GCAGACTAAAACAAATCGCTAAAGATATAGTAAAACACTTTGAAACAAGGTCTAGTAAGCTCGGCGGAAAAGGTATGATA GTAAGTATAAGCCGAAGCGTAGCTATAAAACTATATGATGAAATCATAAAAATAAGACCAAGTTGGCATAGCGATGAGCT AAGTAGCGGGGCTATAAAAGTAGTGATGACTTCAAGCTCTAGCGATGGGGTAGAGTTTAGTAAACATCATACAAGTAAGA TTCAAAAGCAGTTTTTGGCAAATCGTATGAGAAATATAGACGATGAATTAAAACTAGTTATAGTGGTGGATATGTGGCTA ACTGGCTTTGATGTGCCATCGCTTCATACTCTTTATATAGATAAGCCTATGAAAGGGCATAATCTAATGCAAGCTATAGC TAGAGTAAATAGGGTTTATAAGGATAAACCTAGTGGGCTTGTGGTGGATTATCTTGGGATTGCAAGTGATTTGAAAAAAG CTTTATCATTTTATAGTGAAAGTGGTGGCAAGGGCGATATAATCACTACTCAAGAAGACGCTGTAAAAGTGATGATAGAA AAGCTTGAAATCGTAGAACAAATGCTGCCAAATGACTATGAAAAATACTTTGAACTTGATACGGGGGCTAAACTTGAATA TATACTTGATGTAGAAGAGCATATATTATCAAATGAAGATGGTAAGAACAGATTTATAAAAGAATTTGCAGCACTTGATA AAGCCTACACGATAGCTATGCCACACGAAAAAGCTTTGAGCATAAAGAATAAAATCGCTTTTATGTATGCGATAAAGGCT AGGTTTTTAAAGTTTGCTAAAGAAAATGAGAATGAAAATTTGCTTAATCAAGCTTTGATAAAGCAAGTAGTAGATAAAGC TATTGTATCATCTAAAGTGGTGGATATTTTTGATGCTAGTGGTATAAAAAAGCCTGATATATCTATACTTTCTGATGAGT TTTTACTAGAAGTAAAGAATATGAAGCGTAAAAATTTAGCCTTTGAAATGCTAAAAAAGATACTAAATGATGAGATAAAA GCAAGAGAAAAGCTAAGCCTAACAAAGGCTAAAAAATTAGCACAAATGCTTAGTGATGCTATCAAAAAATATAACAATAA GCTAATCTCATCAAGCGAGGCACTAGATGAGCTAATAAATATGAGTAAAAGCATAGTAAGTATGGAAGATGAGGCTAAGA AGTTAGGTTTAAAAGACTATGAATACGCCTTTTACTCAGCACTTGCTTGTAATGATGAGTATGAAAAGATTTTAGGCAAT GAAAAACTATTAGCACTCGTTAGTGAAATACTGCAAATTATCAAAAACAATGTAAGTATAGACTGGATGATAAAAGAAAA TGTAAGAGCAAGATTAAGAGTAGCTGTAAAAAGAGTGTTAAATAAGTATGGTTATCCACCTGATATGCAACAACTTGCAA TTGATGGAGTTTTAGCTCAAGCTGAAATTTTGGCTAAGGAATTAGCTAACGAGTAG Protein sequence : MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVNALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENF HYKLVNGVNINTTKDGESRADIINLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNKSLEIKTLIDGMLNPKTLLDIIC NFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNKAISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALN NPTILLITDRNDLDDQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLSLRDNIIVI ADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGFTGTPIESHDINTPAVFGNYIDIYDISRAVE DGATVSIYYESRLAKIELSEEGKRLVNELDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMI VSISRSVAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMRNIDDELKLVIVVDMWL TGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVVDYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIE KLEIVEQMLPNDYEKYFELDTGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAIKA RFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLLEVKNMKRKNLAFEMLKKILNDEIK AREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEALDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGN EKLLALVSEILQIIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELANE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 45 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 45 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 45 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 43 |
