Gene Information

Name : N646_0742 (N646_0742)
Accession : YP_008535112.1
Strain :
Genome accession: NC_022349
Putative virulence/resistance : Virulence
Product : translocation protein in type III secretion
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 836128 - 836814 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence : 
ATGTTAGGCGGCACCATGGTGAGAAATGGTGTGCTTTGCTCACTCGCACTGTTTATATTTCCGATGATTAATCAGCAAAG
CTTGCCCGCAGAAACCGACGGCATTTGGCTGATAATGATTTTGGGTAAGGAGGTATTAATTGGGCTATTGATAGGGTTTG
TTGCTGCTATCCCTTTTTGGGCGATAGAAGCGGCCGGTTTTCTGGTCGACAACCAACGTGGGGCTGCCATGGCAAGTATG
TTTAACCCAACGCTAGGCTCACAATCCACACCAACAGCGGTATTACTGACCCAAACGTTGATTACCCTGTTCTTCTCTGG
CGGGGGCTTTGTCACTTTTATCTATGCGTTATTCAAAAGCTATACATCTTGGCCGATCGTGGACTTTTTCCCAACCGTTA
GCGACGCATGGGTGAGCTTCTTCTACGCGCAATTTGAACAGCTTATGTGGCTTGGTGTGTTGATGTCCGCTCCATTAGTG
TTGGCAATGTTTCTTGCTGAGTTTGGTCTAGCGCTTATCAGTCGTTTTGCACCGCAATTGAATGTTTTTTTCCTTGCCAT
GCCAATAAAAAGTGCCATCGCGAGTGTTTTACTGATCGTGTATCTCGGAATAATGATGGATCACTTTGAAGTACAGTTTT
ACGGCATTACCCGATTCGCAGAACAACTCAATACCATTTGGCAATAA

Protein sequence : 
MLGGTMVRNGVLCSLALFIFPMINQQSLPAETDGIWLIMILGKEVLIGLLIGFVAAIPFWAIEAAGFLVDNQRGAAMASM
FNPTLGSQSTPTAVLLTQTLITLFFSGGGFVTFIYALFKSYTSWPIVDFFPTVSDAWVSFFYAQFEQLMWLGVLMSAPLV
LAMFLAEFGLALISRFAPQLNVFFLAMPIKSAIASVLLIVYLGIMMDHFEVQFYGITRFAEQLNTIWQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscT AAO18038.1 LscT Virulence TTSS locus Protein 1e-55 64
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 1e-26 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N646_0742 YP_008535112.1 translocation protein in type III secretion VFG0186 Protein 5e-53 65
N646_0742 YP_008535112.1 translocation protein in type III secretion VFG0396 Protein 2e-63 63