Gene Information

Name : N646_0741 (N646_0741)
Accession : YP_008535111.1
Strain :
Genome accession: NC_022349
Putative virulence/resistance : Virulence
Product : translocation protein in type III secretion
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 835766 - 836032 bp
Length : 267 bp
Strand : +
Note : -

DNA sequence : 
ATGCATTCTGCTGAAATCATTCATTTCACGACTCAAGCATTAACCCTAGTGTTGTACTTGTCATTACCGCCGATTTTAGT
CGCAGCATTGGTTGGTACATTGGTGTCGCTTATTCAGGCGTTAACTCAGGTCCAAGAACAAACGTTAGGCTTTGTGGTCA
AGCTTATCGCGGTCATTATTACGCTGTTCGTCACAACGCAATGGCTAGGGGCAGAGCTCCACGCCTTCGCCTCGCTTGCT
ATGGATAAAATTCCTCAAATACGATGA

Protein sequence : 
MHSAEIIHFTTQALTLVLYLSLPPILVAALVGTLVSLIQALTQVQEQTLGFVVKLIAVIITLFVTTQWLGAELHAFASLA
MDKIPQIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscS AAO18039.1 LscS Virulence TTSS locus Protein 3e-24 69
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 5e-13 50
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 2e-10 49
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 2e-10 49
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 1e-10 49
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 1e-07 49
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 1e-07 49
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 2e-10 49
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 1e-10 48
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 1e-10 48
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 1e-10 48
spaQ AAS66866.1 SpaQ Not tested SSR-2 Protein 2e-09 48
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 1e-11 47
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 2e-11 47
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 2e-11 47
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 2e-11 47
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-11 47
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 3e-10 47
epaQ AAZ31292.1 EpaQ Virulence ETT2 Protein 1e-10 46
ECs3724 NP_311751.1 EpaQ Not tested LIM Protein 2e-10 46
escS AFO66341.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-12 43
escS AFO66401.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-12 43
ysaS AAS66847.1 YsaS Not tested SSR-1 Protein 1e-06 43
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-08 42
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-08 42
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 1e-08 42
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 1e-08 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG0395 Protein 7e-27 71
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG0187 Protein 6e-18 66
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG0043 Protein 1e-17 56
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG0520 Protein 4e-12 47
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG1772 Protein 7e-11 43
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG2454 Protein 3e-05 42
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG0550 Protein 4e-09 42
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG2132 Protein 9e-10 42
N646_0741 YP_008535111.1 translocation protein in type III secretion VFG1013 Protein 5e-09 41