Gene Information

Name : N646_2324 (N646_2324)
Accession : YP_008536673.1
Strain :
Genome accession: NC_022349
Putative virulence/resistance : Virulence
Product : General secretion pathway protein F
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2517700 - 2518917 bp
Length : 1218 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGGCATTTGAGTACAAAGCGCTAGATGCAAAAGGCAAGCATAAAAAAGGCACGATAGAAGGGGACAACGCCCGACA
AGTGCGCCAGCGACTCAAAGAGCAAGGGATGATCCCGATTGAAGTGGTTGAGACGAAAGCTAAATCGGCTAAGTCTTCAG
GCTCAGTCAGCTTTAAGCGCGGCATCTCAACATCTGAGCTGGCACTCATCACACGTCAATTGTCCACGTTAGTCCAATCA
GGCATGCCTCTGGAAGAATGTTTGCGCGCGGTCTCTGAGCAGGCTGAAAAGCCGAGAATTCGTTCTATGCTGGCTGCGGT
TCGCTCGAAAGTAACCGAGGGTTATCCGCTCGCCGACAGTTTTGCTGATTACCCACACGTGTTTGATGAACTGTACCGCT
CTATGGTTGCGGCGGGCGAAAAATCAGGTCACCTCGATACCGTATTAGAGCGTTTGGCAGACTATGTCGAAAACCGCCAA
AAGATGCGATCTAAATTGCTTCAAGCCATGATTTATCCTGTAGTTTTGGTGGTATTCGCGGTTGTCATCGTTTCGTTCTT
ATTGGCGACAGTGGTTCCTAAAATCATTGAACCCATCATTCAGATGGGCCAAGAGTTACCTCAATCGACGCAATTTTTAC
TGGCAGCCAGTGAGTTTGTGCAAGATTGGGGGCTGATTATTTTCGTTGTGCTGGTGGCGCTTTTCTATGGCCTCAAACTG
GCGTTGCAAAAGCCAGACTTTCGCTTAGCTTGGGACAGAAAAATCTTGAGCTTACCGCTAATAGGTAAGATCTCTCGAGG
TTTGAATACCGCACGATTCGCACGAACACTTTCGATCTGTACTTCCAGTGCTATTCCAATTCTCGAGGGTATGCGCGTTG
CGGTAGATGTTATGTCTAACCGTTATGTGAAGCAGCAAGTCTTGCTTGCAGCGGATAACGTCCGAGAGGGCGCTAGTTTG
CGTAAGGCGTTGGACCAAACTCGCTTGTTTCCACCAATGATGCTACACATGATCGCCAGTGGTGAGCAAAGTGGTGAATT
AGAGAGCATGTTGACGCGGGCAGCCGATAACCAAGATCAAAACTTTGAATCAACAGTCAATATTGCTCTGGGTGTGTTTA
CTCCTGCGCTGATTGCATTAATGGCTGGATTAGTGTTGTTCATTGTGATGGCGACCTTGATGCCAATGCTAGAAATGAAT
AACTTGATGAGCGGATAA

Protein sequence : 
MAAFEYKALDAKGKHKKGTIEGDNARQVRQRLKEQGMIPIEVVETKAKSAKSSGSVSFKRGISTSELALITRQLSTLVQS
GMPLEECLRAVSEQAEKPRIRSMLAAVRSKVTEGYPLADSFADYPHVFDELYRSMVAAGEKSGHLDTVLERLADYVENRQ
KMRSKLLQAMIYPVVLVVFAVVIVSFLLATVVPKIIEPIIQMGQELPQSTQFLLAASEFVQDWGLIIFVVLVALFYGLKL
ALQKPDFRLAWDRKILSLPLIGKISRGLNTARFARTLSICTSSAIPILEGMRVAVDVMSNRYVKQQVLLAADNVREGASL
RKALDQTRLFPPMMLHMIASGEQSGELESMLTRAADNQDQNFESTVNIALGVFTPALIALMAGLVLFIVMATLMPMLEMN
NLMSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 9e-96 54
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-94 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
N646_2324 YP_008536673.1 General secretion pathway protein F VFG2049 Protein 5e-91 54
N646_2324 YP_008536673.1 General secretion pathway protein F VFG0181 Protein 9e-87 48
N646_2324 YP_008536673.1 General secretion pathway protein F VFG1870 Protein 8e-76 42