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Name : N646_1617 (N646_1617) Accession : YP_008535987.1 Strain : Genome accession: NC_022349 Putative virulence/resistance : Virulence Product : type IV pilin assembly protein PilB Function : - COG functional category : - COG ID : - EC number : - Position : 1734544 - 1736229 bp Length : 1686 bp Strand : + Note : - DNA sequence : ATGCTAACCAAACTCTCAACGGTTCTTCGCCAAAAAGGGTTACTAACATTTTCCCAAGAAGAATCGTTAATAGAGCAAGT CAAAGCTTCTGGCATTTCGATGCCGGAAGCTTTACTCAGTTCTGGATTCTTCACGTCAAGTGAGCTCGCTGATCACTTAA GTTCTCTCTTTGGTTTAAATCAGTCTGAGTTATCTCAGTATGAGTACGCTTCGCTTTGTCAGCAACTTGGTCTTAGGGAA TTAATCACACGGCATAACGCACTCCCACTCCAGCGTACGTCTTCAACGTTATTACTCGCCGTTGCCGACCCCACCAACCA ACAAGCCGAAGATGACTTCCGCTTTGCCACTGGGTTACAGGTTGAACTAGTCTTGGCGGATTTTCGTCAACTCAGCGCGG CAATTCGACGCTTGTATGGTCGTTCATTGAATCATGAGAAGTCTGGGTTAAAAGAGATCAACCAAGAAGAGTTAGCCAAC CTGGTTGATGTGGGCGCAGATGAAATCGACAACATTGAAGACTTGAGCCAAGATGAGTCTCCTGTTAGCCGTTACATCAA CCAAATTCTGTTGGACGCTGTGCGCAAAGGCGCATCCGATATCCACTTTGAGCCTTATGAAAAGATGTACCGCGTGCGCC TACGCTGTGATGGCATCTTAATTGAAACACAGCAGCCACCAAGCCACTTAAGTCGCCGCTTATCCGCTCGTATCAAAATC CTCTCTAAACTTGATATTGCAGAGCGACGTTTACCACAAGATGGGCGTATTAAGCTCAAGTTGAATCAAGACACCGCAAT TGATATGCGTGTATCCACGCTACCGACTCTATTCGGAGAGAAAATTGTACTACGACTGCTCGACAGCAGCTCTGCGTCAC TGGATATCGACAAGCTTGGTTATAGCGAACAACAAAAACAATTGTACTTGGATGCGCTGCGTCGCCCACAAGGCATGATT CTGATGACAGGCCCAACAGGGAGCGGTAAAACCGTTTCTCTATACACTGGGCTAAGTATCCTCAATAAGCCAGAAATCAA CATTTCCACGGCAGAAGACCCAGTAGAAATTAACTTATCGGGCATTAACCAAGTTCAAGTTCAGCCTAAGATTGGTTTTG GTTTTGCCGAAGCCCTGCGCTCTTTCTTACGTCAAGACCCGGATGTGGTAATGGTCGGTGAGATTCGTGACTTAGATACC GCCGAAATCGCTATAAAAGCATCGCAAACCGGTCACTTAGTACTTTCAACCTTACATACCAATTCTGCGGCTGAAACGGT TATTCGTTTATCAAACATGGGCGTAGAAAGCTTTAACTTGGCCTCCTCTCTTAGTTTGATCATTGCCCAGCGCTTGGCCC GTAAACTGTGCTCGCACTGTAAAAAATCACAAGAGCTTACCGTTCAGCTACAACATCTTGGAATTCAAGCAAGCGACAAC ATTTTTAAAGCCAATCCCGATGGATGTAATGAGTGTACCCATGGTTATTCCGGCCGAACGGGGATTTATGAAGTGATGCG CTTTGATGAATTTCTTTCCGAAGCGCTTATTAAAGGCGCCTCGGTGCATGAACTAGAAAAACTCGCCATCGCAAACGGGA TGAGCACGTTACAAATGTCGGGCATAGAAAAACTCAAACAAGGGATCACAAGTTTTAGTGAACTACAGCGCGTACTTTAT TTTTAA Protein sequence : MLTKLSTVLRQKGLLTFSQEESLIEQVKASGISMPEALLSSGFFTSSELADHLSSLFGLNQSELSQYEYASLCQQLGLRE LITRHNALPLQRTSSTLLLAVADPTNQQAEDDFRFATGLQVELVLADFRQLSAAIRRLYGRSLNHEKSGLKEINQEELAN LVDVGADEIDNIEDLSQDESPVSRYINQILLDAVRKGASDIHFEPYEKMYRVRLRCDGILIETQQPPSHLSRRLSARIKI LSKLDIAERRLPQDGRIKLKLNQDTAIDMRVSTLPTLFGEKIVLRLLDSSSASLDIDKLGYSEQQKQLYLDALRRPQGMI LMTGPTGSGKTVSLYTGLSILNKPEINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLDT AEIAIKASQTGHLVLSTLHTNSAAETVIRLSNMGVESFNLASSLSLIIAQRLARKLCSHCKKSQELTVQLQHLGIQASDN IFKANPDGCNECTHGYSGRTGIYEVMRFDEFLSEALIKGASVHELEKLAIANGMSTLQMSGIEKLKQGITSFSELQRVLY F |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-75 | 48 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-75 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| N646_1617 | YP_008535987.1 | type IV pilin assembly protein PilB | VFG0112 | Protein | 1e-124 | 53 |
| N646_1617 | YP_008535987.1 | type IV pilin assembly protein PilB | VFG1880 | Protein | 3e-113 | 51 |
| N646_1617 | YP_008535987.1 | type IV pilin assembly protein PilB | VFG2048 | Protein | 1e-76 | 49 |
| N646_1617 | YP_008535987.1 | type IV pilin assembly protein PilB | VFG0233 | Protein | 3e-94 | 45 |
| N646_1617 | YP_008535987.1 | type IV pilin assembly protein PilB | VFG0182 | Protein | 6e-80 | 44 |
