|
Name : G157_01775 (G157_01775) Accession : YP_008533079.1 Strain : Campylobacter coli CVM N29710 Genome accession: NC_022347 Putative virulence/resistance : Virulence Product : capsular polysaccharide export protein KpsC Function : - COG functional category : - COG ID : - EC number : - Position : 361643 - 363670 bp Length : 2028 bp Strand : + Note : COG3563 Capsule polysaccharide export protein DNA sequence : ATGAAATTTTATACCATATCAAAAAAATTAAAAGAAAATGTTAAAAATTTTTATAAAATAGATCTATATCATGCTTATAA AAACATCACAAAAGAAGATATTTTTGTAGGTTGGGGCAGAAAAAATTCAGGTTTAAAAGCTATAGCTCTAGCCAAAAAAC ACAATGCTAAATTTATGCTTTTAGAAGATGGTTTTTTGCGCTCATTAAATTTAGGCATAGAAAATAGTCCGAGTTTTTCT ATAGTTAAAGATGATGTGGGGGTTTATTATGATGCGAGCACTCCTTCAAGGCTTGAAAATATTTTAAATACTTATGAGTT TAGCCCCAAAGAGCTAACTTGGGCAAAAAAAGCCATAGAGCTTATCAAAAAAGAAAAACTCAGCAAGTATAATAACAATC TTTGCATACCTCAAGAGCTTTTCAGCGCCAATGAAGAACGCGTTCTAATCATCACTCAAGTGGCAAATGACGCTTCACTT CGATTTGGTTTGGCAAGTGATTTTTCGACCCAAGATATCATAAATGACGCCCTAAAAGAAAATCCAAATGCTAAAATATA TATCAAAATCCATCCTGATGTGTTAAGTGGCAAAAAACAAAGCGATTTTAGCATGCAAGATTTACCCAGTAGATGCGTGA TTTTAAAAGAAAATTATAATCCCATAGAATTATTAAGCCATTTTAAAAAAGTCTATACTAAGACTTCAGGTATGGGTTTT GAAGCTTTGATGCTAGGATGTAAATGCGTGTGCTATGGCATGCCTTTTTATGCAGGATGGGGATTAACTCAAGATAAGCT AGAGTGTAAAAGAAGGATTAAAAAAAGATCCTTAGAAGAAGTTTTTTATGCTGCTTATATCCTATACAGTGAGTATTTTA ATCCTTATTTAAATCAAAAAAGTGATATTTTTGATACTATTTTTACCCTAGCAAGATACAAAAAGATAGAGCAAGTAAAT TCTCATACTTTATATTTTTTAGGCTTTACTTTATGGAAGCGTTGGTTTATGAAGCCATTTTTCAAGGCCAAAAACAATAA AATTATTTTTTTAAACTCACTTAATGAACTTTACAAAGCGAATTTAAATTCCGAAGATAAAATCTTCATTTGGGGCAAAA AGTATGATAAAGCTTTGCTGGCCAAAGATTTTAACAATGAAATTTTTTTAGTAGAAGATGGCTTTTTGCGCTCGGTTTTT TTAGGTTCAGATCTTACGCGTCCTTTTTCTTTGATAGTAGATAGCAAGGGTTTGTATGTAGATCCTAATCACCCTAGCGA TTTAGAAGAGCTTTTGCAAAATCATGAATTTGATGATACTTTAAGACAAAGAGCCAAAAAGCTCATCACTACCATAACGC AAAATAAATTTTCAAAGTACAACGGCCTAAAGCATGAAAAACTTGACTTTAATACAAATAAAAAAATCATTTTAATTCCC GCTCAAGTAGAAGATGATGCTTCGATGATCTTAGGTGGAGCAGATTTTGACACCTTAAAGCTTTTACAAAGCGTAAGAGC TGCAAATAAAGACGCCTTTGTCGTTTTTAAGCCTCATCCTGATGTTTTAAGTGGAAATCGCAAGGGTTTAAAGGATAAAG ATATCATTTTAAAATACTGCGATGAGATCATAGAAAATGTCAGCATAGACAGCGCCATAAATGCATGTGATGAAGTACAT ACTATCACTTCTACAAGTGGCTTTGACGCTCTTTTGCGTGGTAAAAAAGTAGTGGTATATGGTAAACCTTTTTATGCGGG CTGGGGTTTGACTCAAGATTTACATCACATCTCAAGACGCACAAGAGTGCTTAGTTTAGAAGAGCTTGTGGCAGGAGTTT TGATCCTTTATCCAAGATATATTCATCCAAAGAGTAAAAATTTATGTGAAGTTGAGCTTGCTTTGGATACAATGTTAGCT TTGCAAAAAGATTATTTTTCAAAAAGATGGCTAAAAATTTTAATTGATTTTAGAATTTTAATGCTTAGAAAGATAAGAAG AATAGGTGAAGTTTTTATAAAAAGATGA Protein sequence : MKFYTISKKLKENVKNFYKIDLYHAYKNITKEDIFVGWGRKNSGLKAIALAKKHNAKFMLLEDGFLRSLNLGIENSPSFS IVKDDVGVYYDASTPSRLENILNTYEFSPKELTWAKKAIELIKKEKLSKYNNNLCIPQELFSANEERVLIITQVANDASL RFGLASDFSTQDIINDALKENPNAKIYIKIHPDVLSGKKQSDFSMQDLPSRCVILKENYNPIELLSHFKKVYTKTSGMGF EALMLGCKCVCYGMPFYAGWGLTQDKLECKRRIKKRSLEEVFYAAYILYSEYFNPYLNQKSDIFDTIFTLARYKKIEQVN SHTLYFLGFTLWKRWFMKPFFKAKNNKIIFLNSLNELYKANLNSEDKIFIWGKKYDKALLAKDFNNEIFLVEDGFLRSVF LGSDLTRPFSLIVDSKGLYVDPNHPSDLEELLQNHEFDDTLRQRAKKLITTITQNKFSKYNGLKHEKLDFNTNKKIILIP AQVEDDASMILGGADFDTLKLLQSVRAANKDAFVVFKPHPDVLSGNRKGLKDKDIILKYCDEIIENVSIDSAINACDEVH TITSTSGFDALLRGKKVVVYGKPFYAGWGLTQDLHHISRRTRVLSLEELVAGVLILYPRYIHPKSKNLCEVELALDTMLA LQKDYFSKRWLKILIDFRILMLRKIRRIGEVFIKR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lipA | NP_273145.1 | capsule polysaccharide modification protein | Not tested | IHT-A | Protein | 1e-105 | 41 |
| kpsC | AAZ04470.1 | capsule polysaccharide export protein | Virulence | PAI I APEC-O1 | Protein | 1e-86 | 41 |
| kpsC | YP_854335.1 | capsule polysaccharide export protein KpsC | Not tested | PAI I APEC-O1 | Protein | 2e-86 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| G157_01775 | YP_008533079.1 | capsular polysaccharide export protein KpsC | VFG0704 | Protein | 1e-89 | 41 |
| G157_01775 | YP_008533079.1 | capsular polysaccharide export protein KpsC | VFG0692 | Protein | 1e-101 | 41 |
| G157_01775 | YP_008533079.1 | capsular polysaccharide export protein KpsC | VFG0259 | Protein | 6e-106 | 41 |
