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Name : M892_04655 (M892_04655) Accession : YP_008525710.1 Strain : Genome accession: NC_022269 Putative virulence/resistance : Virulence Product : T3SS/outer membrane pore protein VscC1 Function : - COG functional category : - COG ID : - EC number : - Position : 1015748 - 1017619 bp Length : 1872 bp Strand : - Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+. DNA sequence : ATGCTTGCCGTTTTAAAAAAACAACTACGCCGACTTGTTTGGTCTGTTGCATGTACTTTGAGTTTGTTGTCGGCATTGCC TTTACACGCATCAGAGTTGGATTGGCCTGATCAGCCGTTTCGTTACTATGCCGACAACGACTCTTTAAAAGAACTATTGA ATAACTTTGGCGCTAACTATCGTGTTTCTGTGTCGGTCAGTGACAAGGTTAATGATCGAGTCAGTGGTCGATTTACGCCT GAAGACCCAGCCGAGTTTCTTGATTACCTAGCACAGGTCTACAACCTGATGTGGTATTTCGATGGCGCGGTGTTGCATGT GTACAAAGCGACGGAAACCCGTTCACGACTGCTACAGCTTGAACTTCTGACGGCACGTGAGCTGCGCAGTACTCTGATAT CGACAGGGGTTTGGGATTCTCGCTACGGTTGGCGTGCGGCAGAGAACAAAGGGTTGGTTTATTTAGCGGGCCCACCTAGA TACGTTGATTTGGTTGTGCAAACGGCCGAAGCGCTGGAAAGCCGATTGGTTCAAAAGTCGAACTCTACTGATGAGCTGTT TGTTGAAATTATTCCTTTGAAATATGCCTCGGCGACGGACAGAGAAATCACTTATCGCGATCAAGCGGTGACGGTGCCGG GCATTGCATCGGTATTAAGCCGAGTATTGTCGGGTGTTCAAACTCAGATCAAAGCAACCAAAGAGAGTGAAGAAACGGAC ATCAATACGGCTGCAACCACGACAAAGAATGTTTCTGTACACGGCGGTGCGTCGGTTGAAGCAGAGCCAGGTTTAAACGC CATCATAGTGCGTGATACGCAAGCGCGCCTGCCTTTGTACCGTAAGTTAGTCGCTCAGTTGGATCAGCCGCAGTCGCGAA TCGAAGTGGCACTCTCGATTGTCGATATCAGCGCGAACGATTTGAGCCAACTGGGTGTGGATTGGCGAGCGGGTATTGAG GTCGGTAACAACAGTATTTTGGACATCAAAACCACAGGTGACGTGGATGGTGGTGATGTAACGCTAGGCAGCGGGCAGAC CTTTAAGTCACTGCTTGATGCGACCAATTTAAACTACTTGTTGGCTCAAATTCGTTTGTTGGAATCTCAGGGTAGTGCTC AAGTCGTGTCTCGACCGACTTTACTAACTCAAGAAAACGTTGAGGCGGTGTTGAACAACAGCAGCACGTTCTACATCAAG TTGATTGGTAGAGAAACGGCGGCGCTTGAAGAAGTGACCTACGGTACCTTACTGCGAATCGTCCCACGTATTGTCGGAGA CCGATTTGTTGAAAGACCAGAAATCAATCTGAGTTTGCATCTTGAAGATGGTGCGCAAATTCCAGATGGCGGTGTTGATG ATGTGCCATCCATCCGCAAGACAGAGATCAGCACGTTGGCGACGGTGAAACAAGGGCAGAGCCTACTCATCGGTGGTGTG TACCGTGATGAAGTGAGTCACCAACTGCGTAAAGTGCCTTTGTTAGGAGACATCCCATACCTTGGTGCCTTGTTTAGAAG TACCACTGATACCACCAGAAGAACGGTGCGCATGTTCATTATTGAGCCGAGAATTGTTGTCGATGGTATTGGTGACAACG TGCTTATCGGTAATGAGTATGACTTAAGACCGAAGCTCGGCACCTTGAACAATATTTCAAATAATAGTGCAGAGCTGAAA TCGGCACTCGCGCTCTACAGCTGTACATCTCAAGTGCAAGCGGAGCGTCATCAGCAAGATCTATTGTCACAGGGCAAATC TTCGCTGTTATCACAATGTGAGTTGCCTTCAGGGCAAAAAGGATGGCGAGTGCAAATCAAAGAGTGTGATGGCTCAGAGA ATCATTGCGTTCGTCCATTAGAGGAGCAATAG Protein sequence : MLAVLKKQLRRLVWSVACTLSLLSALPLHASELDWPDQPFRYYADNDSLKELLNNFGANYRVSVSVSDKVNDRVSGRFTP EDPAEFLDYLAQVYNLMWYFDGAVLHVYKATETRSRLLQLELLTARELRSTLISTGVWDSRYGWRAAENKGLVYLAGPPR YVDLVVQTAEALESRLVQKSNSTDELFVEIIPLKYASATDREITYRDQAVTVPGIASVLSRVLSGVQTQIKATKESEETD INTAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIE VGNNSILDIKTTGDVDGGDVTLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYIK LIGRETAALEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIRKTEISTLATVKQGQSLLIGGV YRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRMFIIEPRIVVDGIGDNVLIGNEYDLRPKLGTLNNISNNSAELK SALALYSCTSQVQAERHQQDLLSQGKSSLLSQCELPSGQKGWRVQIKECDGSENHCVRPLEEQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscC | AAO18033.1 | LscC | Virulence | TTSS locus | Protein | 9e-122 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| M892_04655 | YP_008525710.1 | T3SS/outer membrane pore protein VscC1 | VFG0211 | Protein | 3e-122 | 49 |
| M892_04655 | YP_008525710.1 | T3SS/outer membrane pore protein VscC1 | VFG0402 | Protein | 6e-128 | 48 |
