Gene Information

Name : M892_04640 (M892_04640)
Accession : YP_008525707.1
Strain :
Genome accession: NC_022269
Putative virulence/resistance : Virulence
Product : T3SS/apparatus needle protein VscF1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1013983 - 1014231 bp
Length : 249 bp
Strand : -
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGTCATTTTACGATGCGAGTAACAGTGTTTATCTCGATGATGTTAAAGCGAAACTAGAAGAACAAGCAAAAGCGGCGAA
TGAAGCCGTGAACGAAGCGATCAAAAACCTAGAAACCAACGCTGATGACCCATCAAAGTTGGCTGAATTGCAGCACACTA
TCAACAAATGGTCGGTGATTTACAACATCAACGCGACCACGACTCGTGCTATCAAGGATGTGATGCAGTCGATTCTGCAG
AAGGTGTAA

Protein sequence : 
MSFYDASNSVYLDDVKAKLEEQAKAANEAVNEAIKNLETNADDPSKLAELQHTINKWSVIYNINATTTRAIKDVMQSILQ
KV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 2e-16 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M892_04640 YP_008525707.1 T3SS/apparatus needle protein VscF1 VFG0214 Protein 7e-18 59
M892_04640 YP_008525707.1 T3SS/apparatus needle protein VscF1 VFG0405 Protein 2e-15 52