Gene Information

Name : M892_04550 (M892_04550)
Accession : YP_008525689.1
Strain :
Genome accession: NC_022269
Putative virulence/resistance : Virulence
Product : T3SS/component VscU1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 996467 - 997516 bp
Length : 1050 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGAGCGGAGAAAAAACAGAACTCCCCACCCCGAAAAAACTTCGGGATGCCCGGCAAAAAGGGCAAGTCGCTAAAAGTCA
GGAAGTCGTCTCATCGGCCTTAATCCTAGCCCTAATTGCCGTCCTATTTGCTTTTGCTGACTACTATATGTCGCACATCT
CTGCCCTACTTTTATTGCCGAGTGAGTTGGCTTATCAAGGGTTTCAGGATGCGTTGCTTGACGTAGCCATCGCCATCGCC
AAAGAAATGGTTTACTTGCTGGCACCGATCCTGATCGTGGCGGCATTGATCGCCATCATGTCGAACATGGGGCAATTCGG
CTTGCTGTTTAGTGGTGAATCCGTCAAACCAGATATCAAAAAGATCAACCCTGTCGAAGGGGCAAAACGAATTTTCTCGC
TAAAGAGCATCATTGAGTTTATTAAATCGATTCTTAAAGTGTCGCTCCTTTCCTGCATTATTTGGGTCACTCTGCGGGGC
AACTTAAACACGCTACTGCAAATCCCGACATGCGGATTAGAGTGTGTACCGACCATCACCGGCGTATTGGTGAAACAACT
CATGATCATCTCTTCCGTCGGCTTTATTGTGATTGCAGCTGCCGATTACGCATATCAAAAATTCGACCACACCAAGCAGC
TGAAGATGACTAAAGACGAGGTCAAACGCGAATATAAAGAGATGGAAGGCAGCCCGGAAATCAAGAGTAAGCGTCGTCAG
TTGCACCAAGAGCTGCAAGCTTCGAACCAAAGAGATAACGTTAAACGTTCGAATGTGTTGGTCACGAACCCAACCCACAT
CGCGATTGGTTTGTACTACAAAAAGGGCGAAACACCGCTGCCTGTGATAACCCTCAAAGAAACCGATGCGATGGCAAAAC
GTATGATCGCGATAGCCCACGAAGAAGGCATCCCTGTGATGCAAAAAGTACCACTCGCACGTGCTCTTTATGCCGATGGT
CAGTTAAACCAGTACATTCCAGGCGATCTTATTGAAGCCACCGCTGAGATCCTGCGTTGGGTTGCGTCTCTTGAGCAGTC
TGAGGAATAG

Protein sequence : 
MSGEKTELPTPKKLRDARQKGQVAKSQEVVSSALILALIAVLFAFADYYMSHISALLLLPSELAYQGFQDALLDVAIAIA
KEMVYLLAPILIVAALIAIMSNMGQFGLLFSGESVKPDIKKINPVEGAKRIFSLKSIIEFIKSILKVSLLSCIIWVTLRG
NLNTLLQIPTCGLECVPTITGVLVKQLMIISSVGFIVIAAADYAYQKFDHTKQLKMTKDEVKREYKEMEGSPEIKSKRRQ
LHQELQASNQRDNVKRSNVLVTNPTHIAIGLYYKKGETPLPVITLKETDAMAKRMIAIAHEEGIPVMQKVPLARALYADG
QLNQYIPGDLIEATAEILRWVASLEQSEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscU AAO18037.1 LscU Virulence TTSS locus Protein 8e-97 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M892_04550 YP_008525689.1 T3SS/component VscU1 VFG0185 Protein 1e-85 63
M892_04550 YP_008525689.1 T3SS/component VscU1 VFG0397 Protein 1e-89 62
M892_04550 YP_008525689.1 T3SS/component VscU1 VFG0041 Protein 4e-56 42