Gene Information

Name : M892_04540 (M892_04540)
Accession : YP_008525687.1
Strain :
Genome accession: NC_022269
Putative virulence/resistance : Virulence
Product : T3SS/component VscS1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 995403 - 995669 bp
Length : 267 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence :

ATGAATCCGGCTGAAATCATCCACTTTACCACTCAGGCTCTAACGCTTGTTCTGTTCTTGTCGCTGCCGCCGATTTTGGT
TGCGGCACTGGTCGGTACCTTGGTCTCTCTCGTCCAAGCGCTAACACAAGTACAAGAACAGACGTTAGGCTTTGTCGTCA
AACTGATCGCCGTCATCATAACCCTATTTGTTACCACACAATGGCTGGGCGCCGAACTGCATTCATTTGCTACCTTGACC
TTGGGTAAAATCCCGCAAATACGATGA

Protein sequence :

MNPAEIIHFTTQALTLVLFLSLPPILVAALVGTLVSLVQALTQVQEQTLGFVVKLIAVIITLFVTTQWLGAELHSFATLT
LGKIPQIR

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
lscS	AAO18039.1	LscS	Virulence	TTSS locus	Protein	1e-24	70
ssaS	CAA68200.1	secretion system apparatus, SsaS	Virulence	SPI-2	Protein	1e-11	49
ssaS	NP_456108.1	putative type III secretion protein	Virulence	SPI-2	Protein	2e-11	49
ssaS	NP_805091.1	type III secretion protein	Virulence	SPI-2	Protein	2e-11	49
ssaS	YP_216428.1	secretion system apparatus protein SsaS	Virulence	SPI-2	Protein	2e-11	49
hrcS	AAB06006.1	HrcS	Virulence	Hrp PAI	Protein	5e-13	49
ssaS	NP_460385.1	type III secretion system apparatus protein	Virulence	SPI-2	Protein	2e-11	49
YPO0271	YP_002345353.1	type III secretion apparatus protein	Virulence	Not named	Protein	2e-08	49
hrcS	AAT96263.1	HrcS	Virulence	S-PAI	Protein	6e-11	48
hrcS	AAT96304.1	HrcS	Virulence	S-PAI	Protein	6e-11	48
hrcS	AAT96344.1	HrcS	Virulence	S-PAI	Protein	6e-11	48
epaQ	AAZ31292.1	EpaQ	Virulence	ETT2	Protein	1e-10	48
ECs3724	NP_311751.1	EpaQ	Not tested	LIM	Protein	2e-10	48
hrcS	ABA47280.1	HrcS	Virulence	S-PAI	Protein	3e-10	47
hrcS	ABQ88360.1	HrcS	Virulence	Hrp PAI	Protein	2e-07	47
hrpO	AAB05076.1	HrpO	Virulence	Hrp PAI	Protein	2e-07	47
hrcS	NP_791221.1	type III secretion protein HrcS	Virulence	Hrp PAI	Protein	6e-10	47
hrcS	AAT96147.1	HrcS	Virulence	T-PAI	Protein	5e-10	47
hrcS	AAT96201.1	HrcS	Virulence	T-PAI	Protein	5e-10	47
hrcS	AAG33885.1	HrcS	Virulence	Hrp PAI	Protein	4e-10	47
spaQ	AAS66866.1	SpaQ	Not tested	SSR-2	Protein	2e-09	44
ysaS	AAS66847.1	YsaS	Not tested	SSR-1	Protein	2e-06	44
spaQ	NP_806492.1	virulence-associated secretory protein	Virulence	SPI-1	Protein	1e-08	44
spaQ	NP_461810.1	needle complex export protein	Virulence	SPI-1	Protein	1e-08	44
spaQ	YP_217808.1	surface presentation of antigens; secretory proteins	Virulence	SPI-1	Protein	1e-08	44
spaQ	NP_457283.1	secretory protein (associated with virulence)	Virulence	SPI-1	Protein	1e-08	44
escS	AFO66341.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	2e-12	41
escS	AFO66401.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	2e-12	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG0395	Protein	5e-27	73
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG0187	Protein	1e-18	69
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG0043	Protein	2e-17	55
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG0520	Protein	4e-12	49
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG0550	Protein	3e-09	44
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG1772	Protein	2e-11	43
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG2454	Protein	2e-05	42
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG1013	Protein	3e-09	42
M892_04540	YP_008525687.1	T3SS/component VscS1	VFG2132	Protein	7e-10	42