Gene Information

Name : M892_04535 (M892_04535)
Accession : YP_008525686.1
Strain :
Genome accession: NC_022269
Putative virulence/resistance : Virulence
Product : T3SS/component VscR1
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 994739 - 995389 bp
Length : 651 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGATCCAGTTACCTGATGAACTGAACCTCATCGTTACACTCGCCCTTCTTGCTTTGATTCCTTTCATTGCAATGATGGC
GACCTCCTTCGTTAAACTGGCCGTGGTTTTCTCTCTGCTAAGAAACGCATTAGGTGTACAACAGATTCCACCCAATATGG
CCTTGTACGGATTGGCGATCATTCTGTCGATCTTCATCATGGCGCCAGTGGGGTTTGAAACCTATGACTACGTGACCCAG
CACGAAATCTCACTTGAAGATTCTGAGAGCATCGAAGGTTTAATCGAGAGCGGATTGCAGCCGTACCGTGAGTTCTTGAA
AAAGCACATCCGTGAAACTGAATCGGTCTTTTTTACCGATGCAGCAAGAACCTTGTGGCCACAAAAGTACGTCGACCGTT
TGGAGTCAGACAGCTTATTGTTGTTGCTCCCCGCCTTTACCGTGAGTGAGCTAACGAGAGCGTTTGAGATTGGCTTCCTG
TTGTACCTGCCATTCATCGCTATCGATCTGATCGTATCCAACATCTTGCTGGCCATGGGCATGATGATGGTCTCGCCAAT
GACCATCTCACTGCCATTCAAACTGCTGCTCTTTGTGTTGCTAGACGGTTGGACCAAGTTGACCCATGGCCTAGTGCTCA
GTTACGGATAA

Protein sequence : 
MIQLPDELNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFETYDYVTQ
HEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRLESDSLLLLLPAFTVSELTRAFEIGFL
LYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFKLLLFVLLDGWTKLTHGLVLSYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-64 78
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-44 57
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-41 54
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-41 54
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-38 54
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 8e-38 54
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 8e-38 54
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-38 54
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-38 54
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-41 54
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-42 53
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-42 53
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-34 53
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-41 52
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-41 52
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 7e-42 52
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-35 52
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-35 52
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-35 52
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-35 52
escR AAC31528.1 L0049 Virulence LEE Protein 3e-35 52
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-35 52
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-35 52
escR AAK26700.1 EscR Virulence LEE Protein 3e-35 52
escR AAL57527.1 EscR Virulence LEE Protein 3e-35 52
escR AAC38369.1 EscR Virulence LEE Protein 2e-34 52
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-35 52
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-34 51
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-35 51
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 9e-35 51
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-32 50
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-32 50
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-32 50
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 8e-32 49
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 9e-34 47
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 8e-34 47
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-29 47
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-29 47
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 7e-35 47
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-35 47
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-34 46
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-34 46
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 2e-29 46
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-29 46
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-31 45
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 1e-34 44
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 3e-35 44
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 2e-34 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG0188 Protein 1e-65 75
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG0394 Protein 1e-62 75
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG0044 Protein 2e-42 57
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG0519 Protein 6e-39 54
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG0827 Protein 1e-35 52
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG0715 Protein 8e-35 52
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG0551 Protein 4e-30 47
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG2338 Protein 1e-23 44
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG1012 Protein 1e-30 43
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG2455 Protein 1e-31 42
M892_04535 YP_008525686.1 T3SS/component VscR1 VFG2494 Protein 1e-25 41