Name : smpB (M892_07325) Accession : YP_008526231.1 Strain : Genome accession: NC_022269 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 1585533 - 1586018 bp Length : 486 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTAAAGAAAAAATCAAAGCAAAAAGCGGGTAGTAACACTATCGCGCTTAACAAAAAAGCTCGCCACGAATACTTCAT TGACGATGAAATTGAAGCTGGCATGGAGCTACAAGGCTGGGAAGTGAAAGCACTTCGCCAAGGCAAAGCCAACATCGCTG AAAGCTACGTTTTCATGCGTGACGGCGAAGCTTTTGTCAGCGGAATGACGATCACACCTCTTAACCAAGCTTCTACTCAT GTTGTCGCAAACCCTACACGTGTGCGCAAACTATTGATGAGTCGTCGTGAACTCGACAACCTTCTTGGTCGCATCAACCG TGAAGGTATGACGCTAGCCGCGTTGTCACTGTACTGGTCTCGCTCTTGGGTAAAGATCAAAATTGGTGTGGCGAAAGGTA AAAAGCTTCACGACAAACGTACCGATCTTAAAGAAAAAGATTGGGCTCGTGAAAAAGCGCGCGTAATGAAGAGCTCACTG CGTTAA Protein sequence : MVKKKSKQKAGSNTIALNKKARHEYFIDDEIEAGMELQGWEVKALRQGKANIAESYVFMRDGEAFVSGMTITPLNQASTH VVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWSRSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMKSSL R |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 4e-58 | 86 |
unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-18 | 43 |