Gene Information

Name : Ser39006_0084 (Ser39006_0084)
Accession : YP_008520466.1
Strain : Serratia sp. ATCC 39006
Genome accession: NC_022268
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 80001 - 80669 bp
Length : 669 bp
Strand : +
Note : KEGG: winged helix family two component transcriptional regulator; PFAM: response regulator receiver, transcriptional regulator domain-containing protein; SMART: response regulator receiver, transcriptional regulator domain-containing protein

DNA sequence : 
ATGAAATTATTGATTGTTGAAGATGATACATTACTACAAGAAGGATTATTACAAGCGTTGAGCAGTGAAGGTTATGTCTG
TGATTGTGCCGGTACAGCAAAAGAAGCCCATGCGCTGATCAGCAGCGCTCACTACAGCCTGGTAATTCTGGATCTAGGCT
TACCGGATGAAGACGGATTAACCCTACTCGCGCGCTGGCGTAAAACTAATTACCAGCAACCTGTTTTGATATTGACTGCC
AGAGATACGGTATCTGACCGCGTCAGTGGTTTGGATGTCGGGGCTGATGACTATCTGGTCAAGCCCTTTGCATTGACAGA
ATTGCAGGCGCGGGTACGGGCGCTAATCCGCCGCCATCAAGGTTCCAGTGATAGCCAGATACAGGTCGACAATATTACTC
TGGATCTTAATAATCAGCAGGTCACGGTGGATGACAAACCCGTGGTGCTCACCCCCAAAGAGTTCGCCATTCTCTCACGT
CTGATTTTAAAAGCGGGCTCTCAAGTACATCGAGAAGTGCTTCATCAGGATATATATAATTGGAACGATGATCCTTCCTC
TAATTCTCTGGAAGTGCATATCCATAATCTCCGACAAAAAATCGGGAAAAATCGTATTCGCACACTGCGAGGATTTGGCT
ATTTATTAACCAAGAGCAGCCAACCATGA

Protein sequence : 
MKLLIVEDDTLLQEGLLQALSSEGYVCDCAGTAKEAHALISSAHYSLVILDLGLPDEDGLTLLARWRKTNYQQPVLILTA
RDTVSDRVSGLDVGADDYLVKPFALTELQARVRALIRRHQGSSDSQIQVDNITLDLNNQQVTVDDKPVVLTPKEFAILSR
LILKAGSQVHREVLHQDIYNWNDDPSSNSLEVHIHNLRQKIGKNRIRTLRGFGYLLTKSSQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-35 42
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-31 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_0084 YP_008520466.1 two component transcriptional regulator, winged helix family BAC0487 Protein 1e-86 88
Ser39006_0084 YP_008520466.1 two component transcriptional regulator, winged helix family NC_002516.2.879194.p Protein 2e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ser39006_0084 YP_008520466.1 two component transcriptional regulator, winged helix family VFG0473 Protein 7e-69 62
Ser39006_0084 YP_008520466.1 two component transcriptional regulator, winged helix family VFG0596 Protein 4e-32 42